Evidence map›Paper›PMID 29242515›Full record

ArticleNature communications2017

Efficient transgenesis and annotated genome sequence of the regenerative flatworm model Macrostomum lignano.

Jakub Wudarski, Daniil Simanov, Kirill Ustyantsev, Katrien de Mulder, Margriet Grelling, Magda Grudniewska, Frank Beltman, Lisa Glazenburg, Turan Demircan, Julia Wunderer and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

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  9. International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Jakub WudarskiEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Antonius Deusinglaan 1, 9713AV, Groningen, The Netherlands.
Daniil SimanovEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Antonius Deusinglaan 1, 9713AV, Groningen, The Netherlands.
Kirill UstyantsevInstitute of Cytology and Genetics, Prospekt Lavrentyeva 10, 630090, Novosibirsk, Russia.
Katrien de MulderHubrecht Institute-KNAW and University Medical Centre Utrecht, Uppsalalaan 8, 3584CT, Utrecht, The Netherlands.
Margriet GrellingEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Antonius Deusinglaan 1, 9713AV, Groningen, The Netherlands.
Magda GrudniewskaEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Antonius Deusinglaan 1, 9713AV, Groningen, The Netherlands.ORCID http://orcid.org/0000-0002-3971-8437
Frank BeltmanEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Antonius Deusinglaan 1, 9713AV, Groningen, The Netherlands.
Lisa GlazenburgEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Antonius Deusinglaan 1, 9713AV, Groningen, The Netherlands.
Turan DemircanHubrecht Institute-KNAW and University Medical Centre Utrecht, Uppsalalaan 8, 3584CT, Utrecht, The Netherlands.
Julia WundererInstitute of Zoology and Center for Molecular Biosciences Innsbruck, University of Innsbruck, Technikerstr. 25, A-6020, Innsbruck, Austria.
Weihong QiFunctional Genomics Center Zurich, Winterthurerstrasse 190, Zurich, CH-8057, Switzerland.
Dita B VizosoEvolutionary Biology, Zoological Institute, University of Basel, Vesalgasse 1, CH-4051, Basel, Switzerland.
Philipp M WeissertEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Antonius Deusinglaan 1, 9713AV, Groningen, The Netherlands.
Daniel OlivieriEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Antonius Deusinglaan 1, 9713AV, Groningen, The Netherlands.
Stijn MoutonEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Antonius Deusinglaan 1, 9713AV, Groningen, The Netherlands.
Victor GuryevEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Antonius Deusinglaan 1, 9713AV, Groningen, The Netherlands.
Aziz AboobakerDepartment of Zoology, University of Oxford, Tinbergen Building, South Parks Road, Oxford, OX1 3PS, United Kingdom.ORCID http://orcid.org/0000-0003-4902-5797
Lukas SchärerEvolutionary Biology, Zoological Institute, University of Basel, Vesalgasse 1, CH-4051, Basel, Switzerland.
Peter LadurnerInstitute of Zoology and Center for Molecular Biosciences Innsbruck, University of Innsbruck, Technikerstr. 25, A-6020, Innsbruck, Austria.
Eugene BerezikovEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Antonius Deusinglaan 1, 9713AV, Groningen, The Netherlands. e.berezikov@umcg.nl.ORCID http://orcid.org/0000-0002-1145-2884

Funding

Austrian Science Fund FWF P 30347Biotechnology and Biological Sciences Research Council BB/K007564/1Medical Research Council MR/M000133/1
6 · The paper itself

Abstract

Regeneration-capable flatworms are informative research models to study the mechanisms of stem cell regulation, regeneration, and tissue patterning. However, the lack of transgenesis methods considerably hampers their wider use. Here we report development of a transgenesis method for Macrostomum lignano, a basal flatworm with excellent regeneration capacity. We demonstrate that microinjection of DNA constructs into fertilized one-cell stage eggs, followed by a low dose of irradiation, frequently results in random integration of the transgene in the genome and its stable transmission through the germline. To facilitate selection of promoter regions for transgenic reporters, we assembled and annotated the M. lignano genome, including genome-wide mapping of transcription start regions, and show its utility by generating multiple stable transgenic lines expressing fluorescent proteins under several tissue-specific promoters. The reported transgenesis method and annotated genome sequence will permit sophisticated genetic studies on stem cells and regeneration using M. lignano as a model organism.

Indexed as

Gene Transfer TechniquesAnimalsAnimals, Genetically ModifiedEmbryo, NonmammalianFemaleGene Expression ProfilingGene Expression Regulation, DevelopmentalGenome, HelminthLuminescent ProteinsMaleOrgan SpecificityOvaryPlatyhelminthsPromoter Regions, GeneticRegenerationTestisLuminescent Proteins

Identifiers

PMID29242515
PMCPMC5730564

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.