Evidence map›Paper›PMID 29242379›Full record

ArticleMolecular & cellular proteomics : MCP2018

High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome.

Chloe Chong, Fabio Marino, HuiSong Pak, Julien Racle, Roy T Daniel, Markus Müller, David Gfeller, George Coukos, Michal Bassani-Sternberg

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed, 206 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Targeted Analyses of MHC-I Peptides Using TOMAHAQ.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Chloe ChongFrom the ‡Ludwig Institute for Cancer Research, University of Lausanne, 1066 Epalinges, Switzerland.
Fabio MarinoFrom the ‡Ludwig Institute for Cancer Research, University of Lausanne, 1066 Epalinges, Switzerland.
HuiSong PakFrom the ‡Ludwig Institute for Cancer Research, University of Lausanne, 1066 Epalinges, Switzerland.
Julien RacleFrom the ‡Ludwig Institute for Cancer Research, University of Lausanne, 1066 Epalinges, Switzerland.
Roy T Daniel¶Service of Neurosurgery, University Hospital of Lausanne, 1011 Lausanne, Switzerland.
Markus Müller‖Vital IT, Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
David GfellerFrom the ‡Ludwig Institute for Cancer Research, University of Lausanne, 1066 Epalinges, Switzerland.
George CoukosFrom the ‡Ludwig Institute for Cancer Research, University of Lausanne, 1066 Epalinges, Switzerland.
Michal Bassani-SternbergFrom the ‡Ludwig Institute for Cancer Research, University of Lausanne, 1066 Epalinges, Switzerland; Michal.bassani@chuv.ch.
University of Lausanne · CHLudwig Cancer Research · CHUniversity Hospital of Lausanne · CHSIB Swiss Institute of Bioinformatics · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Comprehensive knowledge of the human leukocyte antigen (HLA) class-I and class-II peptides presented to T-cells is crucial for designing innovative therapeutics against cancer and other diseases. However methodologies for their purification for mass-spectrometry analysis have been a major limitation. We designed a novel high-throughput, reproducible and sensitive method for sequential immuno-affinity purification of HLA-I and -II peptides from up to 96 samples in a plate format, suitable for both cell lines and tissues. Our methodology drastically reduces sample-handling and can be completed within five hours. We challenged our methodology by extracting HLA peptides from multiple replicates of tissues (

Indexed as

B-LymphocytesCell LineHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHumansInterferon-gammaLigandsNeoplasmsPeptidesProteomicsT-LymphocytesHistocompatibility Antigens Class IHistocompatibility Antigens Class IIInterferon-gammaLigandsPeptides

Identifiers

PMID29242379
PMCPMC5836376
OpenAlexW2792236348

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.