Evidence map›Paper›PMID 29241550›Full record

ArticleCell reports2017

Structural Determination of the Broadly Reactive Anti-IGHV1-69 Anti-idiotypic Antibody G6 and Its Idiotope.

Yuval Avnir, Kristina L Prachanronarong, Zhen Zhang, Shurong Hou, Eric C Peterson, Jianhua Sui, Hatem Zayed, Vinodh B Kurella, Andrew T McGuire, Leonidas Stamatatos and 12 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

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  11. Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 2 countries.

Yuval AvnirDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Medicine, Harvard Medical School, Boston, MA, USA.
Kristina L PrachanronarongDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA.
Zhen ZhangDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Medicine, Harvard Medical School, Boston, MA, USA.
Shurong HouDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA.
Eric C PetersonDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Medicine, Harvard Medical School, Boston, MA, USA.
Jianhua SuiDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Medicine, Harvard Medical School, Boston, MA, USA.
Hatem ZayedDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Medicine, Harvard Medical School, Boston, MA, USA.
Vinodh B KurellaDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Medicine, Harvard Medical School, Boston, MA, USA.
Andrew T McGuireVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Leonidas StamatatosVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Brendan J HilbertDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA.
Markus-Frederik BohnDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA.
Timothy F KowalikDepartment of Microbiology and Physiological Systems, University of Massachusetts Medical School, Worcester, MA, USA.
Jeffrey D JensenSchool of Life Sciences, Center for Evolution and Medicine, Arizona State University, Tempe, AZ, USA.
Robert W FinbergDepartment of Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
Jennifer P WangDepartment of Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
Margaret GoodallInstitute of Immunology and Immunotherapy, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
Roy JefferisInstitute of Immunology and Immunotherapy, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
Quan ZhuDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Medicine, Harvard Medical School, Boston, MA, USA.
Nese Kurt YilmazDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA. Electronic address: nese.kurtyilmaz@umassmed.edu.
Celia A SchifferDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA. Electronic address: celia.schiffer@umassmed.edu.
Wayne A MarascoDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Medicine, Harvard Medical School, Boston, MA, USA. Electronic address: wayne_marasco@dfci.harvard.edu.
University of Massachusetts Chan Medical School · USHarvard University · USDana-Farber Cancer Institute · USFred Hutch Cancer Center · USUniversity of Birmingham · GBArizona State University · US

Funding

Studies of IGHV Germline Gene Polymorphism, Utilization & Shifting for Seasonal Influenza Vaccine Induced Broadly Neutralizing Antibody ResponsesR01AI121285 · NIAID · DANA-FARBER CANCER INST · PI MARASCO, WAYNE A. · 2016 to 2020
$4.0M
Structural Requirements for Broadly Protecting Antibodies to Influenza A & BR56AI109223 · NIAID · DANA-FARBER CANCER INST · PI MARASCO, WAYNE A. · 2014 to 2014
$645k
NIAID NIH HHS R01 AI121285NIAID NIH HHS R56 AI109223
6 · The paper itself

Abstract

The heavy chain IGHV1-69 germline gene exhibits a high level of polymorphism and shows biased use in protective antibody (Ab) responses to infections and vaccines. It is also highly expressed in several B cell malignancies and autoimmune diseases. G6 is an anti-idiotypic monoclonal Ab that selectively binds to IGHV1-69 heavy chain germline gene 51p1 alleles that have been implicated in these Ab responses and disease processes. Here, we determine the co-crystal structure of humanized G6 (hG6.3) in complex with anti-influenza hemagglutinin stem-directed broadly neutralizing Ab D80. The core of the hG6.3 idiotope is a continuous string of CDR-H2 residues starting with M53 and ending with N58. G6 binding studies demonstrate the remarkable breadth of binding to 51p1 IGHV1-69 Abs with diverse CDR-H3, light chain, and antigen binding specificities. These studies detail the broad expression of the G6 cross-reactive idiotype (CRI) that further define its potential role in precision medicine.

Indexed as

Amino Acid SequenceAntibodies, Anti-IdiotypicAntibodies, Monoclonal, HumanizedAntibodies, NeutralizingAntibodies, ViralAntibody SpecificityBinding SitesCloning, MolecularCrystallography, X-RayGene ExpressionHemagglutinin Glycoproteins, Influenza VirusHumansModels, MolecularOrthomyxoviridaeProtein BindingProtein Interaction Domains and MotifsAntibodies, Anti-IdiotypicAntibodies, Monoclonal, HumanizedAntibodies, NeutralizingAntibodies, ViralHemagglutinin Glycoproteins, Influenza Virushemagglutinin, human influenza A virusIGHV1-69 protein, humanReceptors, Antigen, B-CellRecombinant Proteinsanti-idiotypic antibodyanti-influenza antibodieschronic lymphocytic leukemiacross-reactive idiotypecrystal structureIGHV polymorphismimmunoglobulin germline genesinfluenzaVH germline genes

Identifiers

PMID29241550
PMCPMC7185437
OpenAlexW2773993925

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.