Evidence map›Paper›PMID 29239168›Full record

ArticleBiochemistry2018

Variation in LOV Photoreceptor Activation Dynamics Probed by Time-Resolved Infrared Spectroscopy.

James N Iuliano, Agnieszka A Gil, Sergey P Laptenok, Christopher R Hall, Jinnette Tolentino Collado, Andras Lukacs, Safaa A Hag Ahmed, Jenna Abyad, Taraneh Daryaee, Gregory M Greetham and 8 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

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  11. Identification of the vibrational marker of tyrosine cation radical using ultrafast transient infrared spectroscopy of flavoprotein systems.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 4 countries.

James N IulianoDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794, United States.ORCID 0000-0003-1213-3292
Agnieszka A GilDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794, United States.ORCID 0000-0001-7583-3080
Sergey P LaptenokSchool of Chemistry, University of East Anglia , Norwich NR4 7TJ, U.K.ORCID 0000-0002-6468-3010
Christopher R HallSchool of Chemistry, University of East Anglia , Norwich NR4 7TJ, U.K.
Jinnette Tolentino ColladoDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794, United States.
Andras LukacsSchool of Chemistry, University of East Anglia , Norwich NR4 7TJ, U.K.ORCID 0000-0001-8841-9823
Safaa A Hag AhmedDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794, United States.
Jenna AbyadDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794, United States.
Taraneh DaryaeeDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794, United States.
Gregory M GreethamCentral Laser Facility, Research Complex at Harwell, Rutherford Appleton Laboratory , Didcot OX11 0QX, U.K.
Igor V SazanovichCentral Laser Facility, Research Complex at Harwell, Rutherford Appleton Laboratory , Didcot OX11 0QX, U.K.
Boris IllarionovInstitut für Biochemie und Lebensmittelchemie, Universität Hamburg , Grindelallee 117, D-20146 Hamburg, Germany.
Adelbert BacherDepartment Chemie, Technische Universität München , D-85747 Garching, Germany.
Markus FischerInstitut für Biochemie und Lebensmittelchemie, Universität Hamburg , Grindelallee 117, D-20146 Hamburg, Germany.ORCID 0000-0001-7243-4199
Michael TowrieCentral Laser Facility, Research Complex at Harwell, Rutherford Appleton Laboratory , Didcot OX11 0QX, U.K.
Jarrod B FrenchDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794, United States.ORCID 0000-0002-6762-1309
Stephen R MeechSchool of Chemistry, University of East Anglia , Norwich NR4 7TJ, U.K.ORCID 0000-0001-5561-2782
Peter J TongeDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794, United States.ORCID 0000-0003-1606-3471
Stony Brook University · USUniversity of East Anglia · GBRutherford Appleton Laboratory · GBUniversität Hamburg · DETechnical University of Munich · DE

Funding

SBU Chemistry-Biology Interface Training ProgramT32GM092714 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SAMPSON, NICOLE S, TONGE, PETER J · 2010 to 2019
$1.7M
Stony Brook University MERGE: Maximizing Excellence in Research and Graduate EduR25GM103962 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GERGEN, JOHN PETER, SPERZEL, TONI · 2014 to 2018
$1.4M
NIGMS NIH HHS R25 GM103962NIGMS NIH HHS T32 GM092714
6 · The paper itself

Abstract

The light, oxygen, voltage (LOV) domain proteins are blue light photoreceptors that utilize a noncovalently bound flavin mononucleotide (FMN) cofactor as the chromophore. The modular nature of these proteins has led to their wide adoption in the emerging fields of optogenetics and optobiology, where the LOV domain has been fused to a variety of output domains leading to novel light-controlled applications. In this work, we extend our studies of the subpicosecond to several hundred microsecond transient infrared spectroscopy of the isolated LOV domain AsLOV2 to three full-length photoreceptors in which the LOV domain is fused to an output domain: the LOV-STAS protein, YtvA, the LOV-HTH transcription factor, EL222, and the LOV-histidine kinase, LovK. Despite differences in tertiary structure, the overall pathway leading to cysteine adduct formation from the FMN triplet state is highly conserved, although there are slight variations in rate. However, significant differences are observed in the vibrational spectra and kinetics after adduct formation, which are directly linked to the specific output function of the LOV domain. While the rate of adduct formation varies by only 3.6-fold among the proteins, the subsequent large-scale structural changes in the full-length LOV photoreceptors occur over the micro- to submillisecond time scales and vary by orders of magnitude depending on the different output function of each LOV domain.

Indexed as

Binding SitesCrystallography, X-RayCysteineFlavin MononucleotideHydrogen BondingModels, MolecularPhotobleachingPhotochemistryPhotoreceptors, MicrobialPhotoreceptors, PlantProtein ConformationProtein DomainsProtein Structure, SecondaryRecombinant ProteinsSpectroscopy, Fourier Transform InfraredSubtraction TechniqueCysteineFlavin MononucleotidePhotoreceptors, MicrobialPhotoreceptors, PlantRecombinant Proteins

Identifiers

PMID29239168
PMCPMC5801046
OpenAlexW2771722818

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.