Evidence map›Paper›PMID 29237841›Full record

ArticleJournal of virology2018

Mammalian Adaptation of an Avian Influenza A Virus Involves Stepwise Changes in NS1.

C Chauché, A Nogales, H Zhu, D Goldfarb, A I Ahmad Shanizza, Q Gu, C R Parrish, L Martínez-Sobrido, J F Marshall, P R Murcia

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  7. Article
  8. Review
  9. Article
  10. Equine Influenza.Cold Spring Harbor perspectives in medicine · 2022
    Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Immunity to Influenza Infection in Humans.Cold Spring Harbor perspectives in medicine · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

C Chauché *MRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.
A Nogales *Department of Microbiology and Immunology, University of Rochester, Rochester, New York, USA.
H ZhuMRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.ORCID https://orcid.org/0000-0003-1617-0146
D GoldfarbMRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.
A I Ahmad ShanizzaMRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.
Q GuMRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.
C R ParrishBaker Institute of Animal Health, Department of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.ORCID https://orcid.org/0000-0002-1836-6655
L Martínez-SobridoDepartment of Microbiology and Immunology, University of Rochester, Rochester, New York, USA.
J F MarshallEquine Clinical Sciences Division, Weipers Centre Equine Hospital, School of Veterinary Medicine, University of Glasgow, Glasgow, United Kingdom.
P R MurciaMRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom Pablo.Murcia@glasgow.ac.uk.ORCID https://orcid.org/0000-0002-4352-394X
MRC University of Glasgow Centre for Virus Research · GBUniversity of Rochester · USCornell University · USUniversity of Glasgow · GB

Funding

The Evolutionary and Biological Bases of Host Switching in VirusesR01GM080533 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI PARRISH, COLIN R. · 2007 to 2019
$4.1M
Medical Research Council G0801822Medical Research Council MC_UU_12014/12Medical Research Council MC_UU_120/14/9Medical Research Council MC_UU_12014/9NIAID NIH HHS HHSN272201400005CNIGMS NIH HHS R01 GM080533
6 · The paper itself

Abstract

Influenza A viruses (IAVs) are common pathogens of birds that occasionally establish endemic infections in mammals. The processes and mechanisms that result in IAV mammalian adaptation are poorly understood. The viral nonstructural 1 (NS1) protein counteracts the interferon (IFN) response, a central component of the host species barrier. We characterized the NS1 proteins of equine influenza virus (EIV), a mammalian IAV lineage of avian origin. We showed that evolutionarily distinct NS1 proteins counteract the IFN response using different and mutually exclusive mechanisms: while the NS1 proteins of early EIVs block general gene expression by binding to cellular polyadenylation-specific factor 30 (CPSF30), NS1 proteins from more evolved EIVs specifically block the induction of IFN-stimulated genes by interfering with the JAK/STAT pathway. These contrasting anti-IFN strategies are associated with two mutations that appeared sequentially and were rapidly selected for during EIV evolution, highlighting the importance of evolutionary processes in immune evasion mechanisms during IAV adaptation.

Indexed as

Evolution, MolecularImmune EvasionAdaptation, PhysiologicalAmino Acid SequenceAnimalsBase SequenceCell LineCleavage And Polyadenylation Specificity FactorCytokinesDogsGene Expression Regulation, ViralGenetic VectorsHEK293 CellsHorsesHost-Pathogen InteractionsHost SpecificityCleavage And Polyadenylation Specificity FactorCytokinesINS1 protein, influenza virusInterferon-betaInterferonsJanus KinasesSTAT1 Transcription FactorViral Nonstructural ProteinsVirulence FactorsevolutioninfluenzaNS1virus-host interactions

Identifiers

PMID29237841
PMCPMC5809720
OpenAlexW2774278057

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.