Evidence map›Paper›PMID 29237728›Full record

ArticleGenome research2018

Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection.

Konstantin Popadin, Stephan Peischl, Marco Garieri, M Reza Sailani, Audrey Letourneau, Federico Santoni, Samuel W Lukowski, Georgii A Bazykin, Sergey Nikolaev, Diogo Meyer and 3 more

Abstract read
In one paragraph

Article in Genome research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Influence of allelic differences in Down syndrome.Progress in brain research · 2020
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Konstantin PopadinDepartment of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland.
Stephan PeischlSwiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Marco GarieriDepartment of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland.
M Reza SailaniStanford School of Medicine, Stanford University, Stanford, California 94305, USA.
Audrey LetourneauDepartment of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland.
Federico SantoniDepartment of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland.
Samuel W LukowskiInstitute for Molecular Bioscience, University of Queensland, Brisbane, QLD 4072, Australia.
Georgii A BazykinInstitute for Information Transmission Problems (Kharkevich Institute) of the Russian Academy of Sciences, Moscow, 127051, Russia.
Sergey NikolaevDepartment of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland.
Diogo MeyerDepartment of Genetics and Evolutionary Biology, University of Sao Paulo, 05508-090, Sao Paulo, Brazil.
Laurent ExcoffierSwiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Alexandre ReymondCenter for Integrative Genomics, University of Lausanne, CH-1015 Lausanne, Switzerland.
Stylianos E AntonarakisDepartment of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland.

Funding

European Research Council 249968
6 · The paper itself

Abstract

The majority of aneuploid fetuses are spontaneously miscarried. Nevertheless, some aneuploid individuals survive despite the strong genetic insult. Here, we investigate if the survival probability of aneuploid fetuses is affected by the genome-wide burden of slightly deleterious variants. We analyzed two cohorts of live-born Down syndrome individuals (388 genotyped samples and 16 fibroblast transcriptomes) and observed a deficit of slightly deleterious variants on Chromosome 21 and decreased transcriptome-wide variation in the expression level of highly constrained genes. We interpret these results as signatures of embryonic selection, and propose a genetic handicap model whereby an individual bearing an extremely severe deleterious variant (such as aneuploidy) could escape embryonic lethality if the genome-wide burden of slightly deleterious variants is sufficiently low. This approach can be used to study the composition and effect of the numerous slightly deleterious variants in humans and model organisms.

Indexed as

AneuploidyDown SyndromeGenotypeTranscriptomeAbortion, SpontaneousChromosomes, Human, Pair 21FemaleHumansPregnancy

Identifiers

PMID29237728
PMCPMC5749173

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.