ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2018
Earliness traits in rapeseed (Brassica napus): SNP loci and candidate genes identified by genome-wide association analysis.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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20 citing papers in PubMed.
- Identification of environment-insensitive genes for oil content by combination of transcriptome and genome-wide association analysis in rapeseed.Biotechnology for biofuels and bioproducts · 2024Article
- Identification of genetic loci and candidate genes regulating photosynthesis and leaf morphology through genome-wide association study inFrontiers in plant science · 2024Article
- Developing genomic tools to assist turnip rape [Frontiers in genetics · 2024Article
- Integration of GWAS and transcriptome analyses to identify SNPs and candidate genes for aluminum tolerance in rapeseed (Brassica napus L.).BMC plant biology · 2022Article
- Construction of a Quantitative Genomic Map, Identification and Expression Analysis of Candidate Genes for Agronomic and Disease-Related Traits inFrontiers in plant science · 2022Article
- SNP- and Haplotype-Based GWAS of Flowering-Related Traits inPlants (Basel, Switzerland) · 2021Article
- Advances and Challenges for QTL Analysis and GWAS in the Plant-Breeding of High-Yielding: A Focus on Rapeseed.Biomolecules · 2021Review
- The Bnapus50K array: a quick and versatile genotyping tool for Brassica napus genomic breeding and research.G3 (Bethesda, Md.) · 2021Article
- Identification of genetic variation for salt tolerance in Brassica napus using genome-wide association mapping.Molecular genetics and genomics : MGG · 2021Article
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- Differentially evolved drought stress indices determine the genetic variation ofJournal of advanced research · 2020Article
- Strong temporal dynamics of QTL action on plant growth progression revealed through high-throughput phenotyping in canola.Plant biotechnology journal · 2020Article
- Quantitative Trait Locus Mapping and Identification of Candidate Genes Controlling Flowering Time inFrontiers in plant science · 2020Article
- Integrating GWAS, linkage mapping and gene expression analyses reveals the genetic control of growth period traits in rapeseed (Biotechnology for biofuels · 2020Article
- Genome-Wide Mapping of Loci Associated With Resistance to Clubroot inFrontiers in plant science · 2020Article
- Dissection of the genetic variation and candidate genes of lint percentage by a genome-wide association study in upland cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
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- Identification and Validation of Candidate Genes Involved in Fatty Acid Content in Oil Palm by Genome-Wide Association Analysis.Frontiers in plant science · 2019Article
- Genomic variations and association study of agronomic traits in flax.BMC genomics · 2018Article
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9 authors.
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Abstract
Life cycle timing is critical for yield and productivity of Brassica napus (rapeseed) cultivars grown in different environments. To facilitate breeding for earliness traits in rapeseed, SNP loci and underlying candidate genes associated with the timing of initial flowering, maturity and final flowering, as well as flowering period (FP) were investigated in two environments in a diversity panel comprising 300 B. napus inbred lines. Genome-wide association studies (GWAS) using 201,817 SNP markers previously developed from SLAF-seq (specific locus amplified fragment sequencing) revealed a total of 131 SNPs strongly linked (P < 4.96E-07) to the investigated traits. Of these 131 SNPs, 40 fell into confidence intervals or were physically adjacent to previously published flowering time QTL or SNPs. Phenotypic effect analysis detected 35 elite allelic variants for early maturing, and 90 for long FP. Candidate genes present in the same linkage disequilibrium blocks (r2>0.6) or in 100 kb regions around significant trait-associated SNPs were screened, revealing 57 B. napus genes (33 SNPs) orthologous to 39 Arabidopsis thaliana flowering time genes. These results support the practical and scientific value of novel large-scale SNP data generation in uncovering the genetic control of agronomic traits in B. napus, and also provide a theoretical basis for molecular marker-assisted selection of earliness breeding in rapeseed.
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