Evidence map›Paper›PMID 29236779›Full record

ArticlePloS one2017

Detection and molecular characterization of the novel recombinant norovirus GII.P16-GII.4 Sydney in southeastern Brazil in 2016.

Débora Maria Pires Gonçalves Barreira, Túlio Machado Fumian, Marco André Loureiro Tonini, Lays Paula Bondi Volpini, Rodrigo Pratte Santos, Anézia Lima Chaves Ribeiro, José Paulo Gagliardi Leite, Márcia Terezinha Baroni de Moraes E Souza, Patrícia Brasil, Denise Cotrim da Cunha and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Human norovirus in Brazil: an update of reports in different settings.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Viruses · 2020
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Débora Maria Pires Gonçalves BarreiraLaboratory of Virology and Infectious Gastroenteritis, Pathology Department, Health Science Center, Federal University of Espírito Santo, Av. Marechal Campos 1468, Maruípe, Vitória, ES, Brazil.ORCID http://orcid.org/0000-0003-4175-6384
Túlio Machado FumianLaboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute, Av. Brasil 4365, Rio de Janeiro, RJ, Brazil.
Marco André Loureiro ToniniLaboratory of Virology and Infectious Gastroenteritis, Pathology Department, Health Science Center, Federal University of Espírito Santo, Av. Marechal Campos 1468, Maruípe, Vitória, ES, Brazil.
Lays Paula Bondi VolpiniLaboratory of Virology and Infectious Gastroenteritis, Pathology Department, Health Science Center, Federal University of Espírito Santo, Av. Marechal Campos 1468, Maruípe, Vitória, ES, Brazil.
Rodrigo Pratte SantosLaboratory of Virology and Infectious Gastroenteritis, Pathology Department, Health Science Center, Federal University of Espírito Santo, Av. Marechal Campos 1468, Maruípe, Vitória, ES, Brazil.
Anézia Lima Chaves RibeiroCentral Laboratory of Public Health, Av. Marechal Mascarenhas de Moraes 2025, Bento Ferreira, Vitória, ES, Brazil.
José Paulo Gagliardi LeiteLaboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute, Av. Brasil 4365, Rio de Janeiro, RJ, Brazil.
Márcia Terezinha Baroni de Moraes E SouzaLaboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute, Av. Brasil 4365, Rio de Janeiro, RJ, Brazil.
Patrícia BrasilAcute Febrile Illnesses Laboratory, Evandro Chagas National Institute of Infectious Diseases, Av. Brasil 4365, Rio de Janeiro, RJ, Brazil.
Denise Cotrim da CunhaSérgio Arouca Public Heath National School, Av. Brasil 4365, Rio de Janeiro, RJ, Brazil.
Marize Pereira MiagostovichLaboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute, Av. Brasil 4365, Rio de Janeiro, RJ, Brazil.
Liliana Cruz SpanoLaboratory of Virology and Infectious Gastroenteritis, Pathology Department, Health Science Center, Federal University of Espírito Santo, Av. Marechal Campos 1468, Maruípe, Vitória, ES, Brazil.
Universidade Federal do Espírito Santo · BRFundação Oswaldo Cruz · BREscola Nacional de Saúde Pública · BRInstituto Evandro Chagas · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Noroviruses are the leading cause of acute gastroenteritis (AGE) in all age groups worldwide. Despite the high genetic diversity of noroviruses, most AGE outbreaks are caused by a single norovirus genotype: GII.4. Since 1995, several different variants of norovirus GII.4 have been associated with pandemics, with each variant circulating for 3 to 8 years. The Sydney_2012 variant was first reported in Australia and then in other countries. A new variant, GII.P16-GII.4, was recently described in Japan and South Korea and then in the USA, France, Germany and England. In our study, 190 faecal specimens were collected from children admitted to a paediatric hospital and a public health facility during a surveillance study of sporadic cases of AGE conducted between January 2015 and July 2016. The norovirus was detected by RT-qPCR in 51 samples (26.8%), and in 37 of them (72.5%), the ORF1-2 junction was successfully sequenced. The new recombinant GII.P16-GII.4 Sydney was revealed for the first time in Brazil in 2016 and predominated among other strains (9 GII.Pe-GII.4, 3 GII.P17-GII.17, 1 GII.Pg-GII.1, 1 GII.P16-GII.3 and 1 GII.PNA-GII.4). The epidemiological significance of this new recombinant is still unknown, but continuous surveillance studies may evaluate its impact on the population, its potential to replace the first recombinant GII.Pe-GII.4 Sydney 2012 variant, and the emergence of new recombinant forms of GII.P16.

Indexed as

Recombination, GeneticAmino Acid SequenceBrazilCaliciviridae InfectionsChildChild, PreschoolHumansInfantNorovirusPhylogenySequence Homology, Amino AcidViral ProteinsViral Proteins

Identifiers

PMID29236779
PMCPMC5728567
OpenAlexW2772625237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.