Evidence map›Paper›PMID 29236694›Full record

ArticleNature2017

Dynamics of phosphoinositide conversion in clathrin-mediated endocytic traffic.

Kangmin He, Robert Marsland, Srigokul Upadhyayula, Eli Song, Song Dang, Benjamin R Capraro, Weiming Wang, Wesley Skillern, Raphael Gaudin, Minghe Ma and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
8.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 158 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Subcellular Cartography of the Phosphoinositide Multiverse.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2026
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Dynamic early recruitment of GAK-Hsc70 regulates coated pit maturation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Physics-informed deep learning for stochastic particle dynamics estimation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  20. Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Kangmin HeDepartment of Cell Biology, Harvard Medical School, 200 Longwood Ave, Boston, Massachusetts 02115, USA.
Robert MarslandPhysics of Living Systems Group, Massachusetts Institute of Technology, 400 Technology Square, Cambridge, Massachusetts 02139, USA.
Srigokul UpadhyayulaDepartment of Cell Biology, Harvard Medical School, 200 Longwood Ave, Boston, Massachusetts 02115, USA.
Eli SongProgram in Cellular and Molecular Medicine, Boston Children's Hospital, 200 Longwood Ave, Boston, Massachusetts 02115, USA.
Song DangProgram in Cellular and Molecular Medicine, Boston Children's Hospital, 200 Longwood Ave, Boston, Massachusetts 02115, USA.
Benjamin R CapraroDepartment of Cell Biology, Harvard Medical School, 200 Longwood Ave, Boston, Massachusetts 02115, USA.
Weiming WangDepartment of Cell Biology, Harvard Medical School, 200 Longwood Ave, Boston, Massachusetts 02115, USA.
Wesley SkillernProgram in Cellular and Molecular Medicine, Boston Children's Hospital, 200 Longwood Ave, Boston, Massachusetts 02115, USA.
Raphael GaudinDepartment of Cell Biology, Harvard Medical School, 200 Longwood Ave, Boston, Massachusetts 02115, USA.
Minghe MaProgram in Cellular and Molecular Medicine, Boston Children's Hospital, 200 Longwood Ave, Boston, Massachusetts 02115, USA.
Tom KirchhausenDepartment of Cell Biology, Harvard Medical School, 200 Longwood Ave, Boston, Massachusetts 02115, USA.
Boston Children's Hospital · USHarvard University · USLiving Systems (United States) · US

Funding

Dynamics of Clathrin Coat Formation in CellsR01GM075252 · NIGMS · IMMUNE DISEASE INSTITUTE, INC. · PI KIRCHHAUSEN, TOMAS · 2005 to 2018
$4.6M
Computational Image Analysis for Cellular and Developmental BiologyR25GM103792 · NIGMS · MARINE BIOLOGICAL LABORATORY · PI DANUSER, GAUDENZ · 2013 to 2017
$297k
NIGMS NIH HHS R01 GM075252NIGMS NIH HHS R25 GM103792NIH HHS GM103792
6 · The paper itself

Abstract

Vesicular carriers transport proteins and lipids from one organelle to another, recognizing specific identifiers for the donor and acceptor membranes. Two important identifiers are phosphoinositides and GTP-bound GTPases, which provide well-defined but mutable labels. Phosphatidylinositol and its phosphorylated derivatives are present on the cytosolic faces of most cellular membranes. Reversible phosphorylation of its headgroup produces seven distinct phosphoinositides. In endocytic traffic, phosphatidylinositol-4,5-biphosphate marks the plasma membrane, and phosphatidylinositol-3-phosphate and phosphatidylinositol-4-phosphate mark distinct endosomal compartments. It is unknown what sequence of changes in lipid content confers on the vesicles their distinct identity at each intermediate step. Here we describe 'coincidence-detecting' sensors that selectively report the phosphoinositide composition of clathrin-associated structures, and the use of these sensors to follow the dynamics of phosphoinositide conversion during endocytosis. The membrane of an assembling coated pit, in equilibrium with the surrounding plasma membrane, contains phosphatidylinositol-4,5-biphosphate and a smaller amount of phosphatidylinositol-4-phosphate. Closure of the vesicle interrupts free exchange with the plasma membrane. A substantial burst of phosphatidylinositol-4-phosphate immediately after budding coincides with a burst of phosphatidylinositol-3-phosphate, distinct from any later encounter with the phosphatidylinositol-3-phosphate pool in early endosomes; phosphatidylinositol-3,4-biphosphate and the GTPase Rab5 then appear and remain as the uncoating vesicles mature into Rab5-positive endocytic intermediates. Our observations show that a cascade of molecular conversions, made possible by the separation of a vesicle from its parent membrane, can label membrane-traffic intermediates and determine their destinations.

Indexed as

EndocytosisAnimalsAuxilinsCell LineCell MembraneChlorocebus aethiopsClathrinClathrin-Coated VesiclesCoated Pits, Cell-MembraneCOS CellsEndosomesHumansPhosphatidylinositol 4,5-DiphosphatePhosphatidylinositol PhosphatesPhosphatidylinositolsPhosphoric Monoester HydrolasesAuxilinsClathrinphosphatidylinositol 3-phosphatePhosphatidylinositol 4,5-Diphosphatephosphatidylinositol 4-phosphatePhosphatidylinositol PhosphatesPhosphatidylinositolsPhosphoric Monoester HydrolasesPhosphotransferasesrab5 GTP-Binding Proteins

Identifiers

PMID29236694
PMCPMC6263037
OpenAlexW2771953154

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.