Evidence map›Paper›PMID 29235495›Full record

ArticleScientific reports2017

Identification of nonsense-mediated mRNA decay pathway as a critical regulator of p53 isoform β.

Lauren E Cowen, Yi Tang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Lauren E CowenDepartment of Regenerative and Cancer Cell Biology, Albany Medical College 47 New Scotland Ave., Albany, NY, 12208, USA.
Yi TangDepartment of Regenerative and Cancer Cell Biology, Albany Medical College 47 New Scotland Ave., Albany, NY, 12208, USA. tangy@amc.edu.
Albany Medical Center Hospital · US

Funding

Est1C Regulation of the p53 Pathway in Stress ResponseR01GM112085 · NIGMS · ALBANY MEDICAL COLLEGE · PI TANG, YI · 2014 to 2018
$1.5M
NIGMS NIH HHS R01 GM112085
6 · The paper itself

Abstract

Human TP53 gene encodes the tumor suppressor p53 and, via alternative splicing, the p53β and γ isoforms. Numerous studies have shown that p53β/γ can modulate p53 functions and are critically involved in regulation of cellular response to stress conditions. However, it is not fully understood how the β and γ isoforms are regulated following splicing. Using gene targeting and RNAi, we showed that depletion of the nonsense-mediated mRNA decay (NMD) factor SMG7 or UPF1 significantly induced p53β but had minimal effect on p53γ. Sequence analysis reveals the presence of unique features - key hallmarks of NMD targets in the p53β transcript, which was further confirmed in NMD reporter gene assays. By manipulating splicing components, we found that NMD activities are crucial to control p53β levels under conditions that favor its splicing. Our data demonstrate that the NMD and alternative splicing pathways regulate p53β in a synergistic manner, and NMD plays a critical role in the determination of the p53β following its splicing. As aberrant p53β expression and dysfunctional NMD are both implicated in cancers, our studies may provide a novel insight into the regulation of p53β in tumorigenic settings.

Indexed as

Nonsense Mediated mRNA DecayCarrier ProteinsCell LineHumansProtein IsoformsRNA HelicasesRNA InterferenceRNA SplicingTrans-ActivatorsTumor Suppressor Protein p53Up-RegulationCarrier ProteinsProtein IsoformsRNA HelicasesSMG7 protein, humanTP53 protein, humanTrans-ActivatorsTumor Suppressor Protein p53UPF1 protein, human

Identifiers

PMID29235495
PMCPMC5727530
OpenAlexW2774074783

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.