Evidence map›Paper›PMID 29234140›Full record

ArticleScientific reports2017

Altered Gut Microbiota Profiles in Sows and Neonatal Piglets Associated with Porcine Epidemic Diarrhea Virus Infection.

Deping Song, Qi Peng, Yanjun Chen, Xinrong Zhou, Fanfan Zhang, Anqi Li, Dongyan Huang, Qiong Wu, Yu Ye, Houjun He and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it, 62 citations in OpenAlex.

  1. Pooled it
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  15. Frontiers in pharmacology · 2023
    Article
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  20. EnterotoxigenicFrontiers in immunology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Deping SongKey Laboratory for Animal Health of Jiangxi Province, Nanchang, Jiangxi, 330045, China.
Qi PengKey Laboratory for Animal Health of Jiangxi Province, Nanchang, Jiangxi, 330045, China.
Yanjun ChenKey Laboratory for Animal Health of Jiangxi Province, Nanchang, Jiangxi, 330045, China.
Xinrong ZhouKey Laboratory for Animal Health of Jiangxi Province, Nanchang, Jiangxi, 330045, China.
Fanfan ZhangKey Laboratory for Animal Health of Jiangxi Province, Nanchang, Jiangxi, 330045, China.
Anqi LiKey Laboratory for Animal Health of Jiangxi Province, Nanchang, Jiangxi, 330045, China.
Dongyan HuangKey Laboratory for Animal Health of Jiangxi Province, Nanchang, Jiangxi, 330045, China.
Qiong WuKey Laboratory for Animal Health of Jiangxi Province, Nanchang, Jiangxi, 330045, China.
Yu YeKey Laboratory for Animal Health of Jiangxi Province, Nanchang, Jiangxi, 330045, China.
Houjun HeKey Laboratory for Animal Health of Jiangxi Province, Nanchang, Jiangxi, 330045, China.
Leyi WangDepartment of Veterinary Clinical Medicine and the Veterinary Diagnostic Laboratory, College of Veterinary Medicine, University of Illinois, Urbana, IL, 61802, USA. leyiwang@illinois.edu.
Yuxin TangKey Laboratory for Animal Health of Jiangxi Province, Nanchang, Jiangxi, 330045, China. tang53ster@gmail.com.
Jiangxi Agricultural University · CNUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine epidemic diarrhea virus (PEDV) is a devastating cause of diarrhea in pigs worldwide. Most of studies have focused on molecular and pathogenic characterization of PEDV, whereas there were limited studies in understanding the role of gut microbiota (GM) in viral-associated diarrhea. Here, using the Illumina MiSeq platform, we examined and compared the impact of PEDV infection on the GM of sows and their piglets less than 10 days old. Our results showed that PEDV caused alternations in the structure and abundance of GM from levels of phylum to genus, and even species. For sows, a significant decrease of observed species was found in diarrheal sows than that in healthy sows (p < 0.05). The unweighted and weighted UniFrac distances also revealed considerable segregations of GM structure among healthy, asymptomatic, and diarrheal sows. For piglets, Bacteroidetes, the dominant bacteria in healthy piglets, were replaced by Firmicutes in asymptomatic and diarrheal piglets. The abundances of Fusobacteria and Proteobacteria were also remarkably increased in asymptomatic piglets and diarrheal piglets when compared to those of the healthy piglets. Our findings demonstrated that PEDV infection caused severe perturbations of GM, reduced probiotic bacteria, and enriched pathogenic bacteria.

Indexed as

Gastrointestinal MicrobiomePorcine epidemic diarrhea virusAnimalsAnimals, NewbornBiodiversityComputational BiologyCoronavirus InfectionsDiarrheaFecesFemaleRNA, BacterialRNA, Ribosomal, 16SSus scrofaSwineSwine DiseasesRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID29234140
PMCPMC5727058
OpenAlexW2771959824

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.