ArticleNature microbiology2018
Author Correction: Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.
Article in Nature microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
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- Thalassospira aquimaris sp. nov. and Winogradskyella marincola sp. nov. two marine bacteria isolated from an agar-degrading co-culture.Antonie van Leeuwenhoek · 2024Article
- Metagenomic Insights into Chicken Gut Antibiotic Resistomes and Microbiomes.Microbiology spectrum · 2022Article
- Syntrophic propionate-oxidizing bacteria in methanogenic systems.FEMS microbiology reviews · 2022Review
- The microbiome of the buffalo digestive tract.Nature communications · 2022Article
- Discovery of nondiazotrophicProceedings of the National Academy of Sciences of the United States of America · 2021Article
- Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions.BMC genomics · 2021Article
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- Molecular Analysis of Bacterial Isolates From Necrotic Wheat Leaf Lesions Caused byFrontiers in microbiology · 2021Article
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- Cyanuric Acid Biodegradation via Biuret: Physiology, Taxonomy, and Geospatial Distribution.Applied and environmental microbiology · 2020Article
- Article
- Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f.Frontiers in microbiology · 2020Article
- BOARD INVITED REVIEW: The pig microbiota and the potential for harnessing the power of the microbiome to improve growth and health1.Journal of animal science · 2019Review
- Mixing of meteoric and geothermal fluids supports hyperdiverse chemosynthetic hydrothermal communities.Nature communications · 2019Article
- Taxogenomics and Systematics of the GenusFrontiers in microbiology · 2019Article
- Genome size evolution in the Archaea.Emerging topics in life sciences · 2018Article
Corrections and comments
- Erratum for
Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In the original version of this Article, the authors stated that the archaeal phylum Parvarchaeota was previously represented by only two single-cell genomes (ARMAN-4_'5-way FS' and ARMAN-5_'5-way FS'). However, these are in fact unpublished, low-quality metagenome-assembled genomes (MAGs) obtained from Richmond Mine, California. In addition, the authors overlooked two higher-quality published Parvarchaeota MAGs from the same habitat, ARMAN-4 (ADCE00000000) and ARMAN-5 (ADHF00000000) (B. J. Baker et al., Proc. Natl Acad. Sci. USA 107, 8806-8811; 2010). The ARMAN-4 and ARMAN-5 MAGs are estimated to be 68.0% and 76.7% complete with 3.3% and 5.6% contamination, respectively, based on the archaeal-specific marker sets of CheckM. The 11 Parvarchaeota genomes identified in our study were obtained from different Richmond Mine metagenomes, but are highly similar to the ARMAN-4 (ANI of ~99.7%) and ARMAN-5 (ANI of ~99.6%) MAGs. The highest-quality uncultivated bacteria and archaea (UBA) MAGs with similarity to ARMAN-4 and ARMAN-5 are 82.5% and 83.3% complete with 0.9% and 1.9% contamination, respectively. The Parvarchaeota represents only 0.23% of the archaeal genome tree and addition of the ARMAN-4 and ARMAN-5 MAGs do not change the conclusions of this Article, but do impact the phylogenetic gain for this phylum. This has now been corrected in all versions of the Article. An updated version of Fig. 5 has also been used to replace the previous version, with the row for Parvarchaeota removed, and Supplementary Table 15 and Supplementary Table 17 have both been replaced to reflect the availability of the two additional Parvarchaeota genomes. In addition, the Methods incorrectly stated that all metagenomes identified as being from studies where MAGs had previously been recovered were excluded from consideration. Metagenomes from studies where MAGs had previously been recovered were retained if the UBA MAGs provided appreciable improvements in genome quality or phylogenetic diversity. All versions of the Article have been updated to indicate the retention of such metagenomes.
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Registered trials
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