Evidence map›Paper›PMID 29234132›Full record

ArticleScientific reports2017

μMAPPS: a novel phasor approach to second harmonic analysis for in vitro-in vivo investigation of collagen microstructure.

F Radaelli, L D'Alfonso, M Collini, F Mingozzi, L Marongiu, F Granucci, I Zanoni, G Chirico, L Sironi

Erratum issuedAbstract readValidation Study
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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  6. APL bioengineering · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

F RadaelliDipartimento di Fisica, Università degli Studi di Milano-Bicocca, Piazza della Scienza 3, 20126, Milano, Italy.
L D'AlfonsoDipartimento di Fisica, Università degli Studi di Milano-Bicocca, Piazza della Scienza 3, 20126, Milano, Italy.ORCID 0000-0002-7378-4462
M ColliniDipartimento di Fisica, Università degli Studi di Milano-Bicocca, Piazza della Scienza 3, 20126, Milano, Italy. maddalena.collini@mib.infn.it.
F MingozziDipartimento di Biotecnologie e Bioscienze, Università degli Studi di Milano-Bicocca, Piazza della Scienza 2, 20126, Milano, Italy.
L MarongiuDipartimento di Biotecnologie e Bioscienze, Università degli Studi di Milano-Bicocca, Piazza della Scienza 2, 20126, Milano, Italy.
F GranucciDipartimento di Biotecnologie e Bioscienze, Università degli Studi di Milano-Bicocca, Piazza della Scienza 2, 20126, Milano, Italy.
I ZanoniDipartimento di Biotecnologie e Bioscienze, Università degli Studi di Milano-Bicocca, Piazza della Scienza 2, 20126, Milano, Italy.
G ChiricoDipartimento di Fisica, Università degli Studi di Milano-Bicocca, Piazza della Scienza 3, 20126, Milano, Italy.
L SironiDipartimento di Fisica, Università degli Studi di Milano-Bicocca, Piazza della Scienza 3, 20126, Milano, Italy. laura.sironi@unimib.it.

Funding

Type III interferon Control of Mucosal ImmunityR01DK115217 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI Scott B Snapper, Ivan Zanoni · 2017 to 2026
$5.6M
Innate control of the inflammatory process during fungal infectionsR01AI121066 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI ZANONI, IVAN · 2016 to 2025
$4.8M
NIAID NIH HHS R01 AI121066NIDDK NIH HHS R01 DK115217
6 · The paper itself

Abstract

Second Harmonic Generation (SHG) is a label-free imaging method used to monitor collagen organization in tissues. Due to its sensitivity to the incident polarization, it provides microstructural information otherwise unreachable by other intensity based imaging methods. We develop and test a Microscopic Multiparametric Analysis by Phasor projection of Polarization-dependent SHG (μMAPPS) that maps the features of the collagen architecture in tissues at the micrometer scale. μMAPPS retrieves pixel-by-pixel the collagen fibrils anisotropy and orientation by operating directly on two coupled phasor spaces, avoiding direct fitting of the polarization dependent SHG signal. We apply μMAPPS to fixed tissue sections and to the study of the collagen microscopic organization in tumors ex-vivo and in-vivo. We develop a clustering algorithm to automatically group pixels with similar microstructural features. μMAPPS can perform fast analyses of tissues and opens to future applications for in-situ diagnosis of pathologies and diseases that could assist histo-pathological evaluation.

Indexed as

AlgorithmsAnimalsBiopsyCell Line, TumorCluster AnalysisCollagenComputer SimulationFemaleMice, Inbred BALB CMice, Inbred C57BLNeoplasm TransplantationPattern Recognition, AutomatedSecond Harmonic Generation MicroscopySignal Processing, Computer-AssistedSoftwareTailCollagen

Identifiers

PMID29234132
PMCPMC5727101

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.