Evidence map›Paper›PMID 29234082›Full record

ArticleScientific reports2017

Rebound of Cotton leaf curl Multan virus and its exclusive detection in cotton leaf curl disease outbreak, Punjab (India), 2015.

Sibnarayan Datta, Raghvendra Budhauliya, Bidisha Das, Reji Gopalakrishnan, Sonika Sharma, Soumya Chatterjee, Vanlalhmuaka, P Srinivas Raju, Vijay Veer

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  16. Non-cultivated Cotton Species (Plants (Basel, Switzerland) · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sibnarayan DattaMolecular Virology Laboratory, Biotechnology Division, Defence Research Laboratory (DRL-DRDO), Tezpur, 784 001, India. sndatta1978@gmail.com.ORCID 0000-0001-6953-1510
Raghvendra BudhauliyaMolecular Virology Laboratory, Biotechnology Division, Defence Research Laboratory (DRL-DRDO), Tezpur, 784 001, India.
Bidisha DasMolecular Virology Laboratory, Biotechnology Division, Defence Research Laboratory (DRL-DRDO), Tezpur, 784 001, India.ORCID 0000-0002-2564-318X
Reji GopalakrishnanMolecular Virology Laboratory, Biotechnology Division, Defence Research Laboratory (DRL-DRDO), Tezpur, 784 001, India.
Sonika SharmaMolecular Virology Laboratory, Biotechnology Division, Defence Research Laboratory (DRL-DRDO), Tezpur, 784 001, India.ORCID 0000-0001-8850-8447
Soumya ChatterjeeMolecular Virology Laboratory, Biotechnology Division, Defence Research Laboratory (DRL-DRDO), Tezpur, 784 001, India.
VanlalhmuakaMolecular Virology Laboratory, Biotechnology Division, Defence Research Laboratory (DRL-DRDO), Tezpur, 784 001, India.
P Srinivas RajuMolecular Virology Laboratory, Biotechnology Division, Defence Research Laboratory (DRL-DRDO), Tezpur, 784 001, India.
Vijay VeerMolecular Virology Laboratory, Biotechnology Division, Defence Research Laboratory (DRL-DRDO), Tezpur, 784 001, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cotton leaf curl disease (CLCuD) outbreaks caused by CLCuD associated begomoviruses (CABs) significantly constrain cotton production in India and Pakistan. In comparison to the CABs circulating in Pakistan, molecular epidemiology, evolution and recombination patterns of CABs circulating in India are less studied. In this work, we characterized CAB complex sequences obtained from the most recent outbreak (Punjab, India, 2015), and rigorously analyzed them with reference to GenBank sequences, submitted from India, Pakistan and other neighbouring countries, using contemporary bioinformatics approaches. In this manuscript, we illustrate the detection of a recombinant, phylogenetically distinct clade of Cotton leaf curl Multan virus (CLCuMuV), suggesting rebound of CLCuMuV in this region. Interestingly, we could not detect Cotton leaf curl Kokhran virus-Burewala strain (CLCuKoV-Bu), which was prevalent in this region, until now. Our study thus indicates substitution of the 'virulent resistance breaking' CLCuKoV-Bu by the re-emerging CLCuMuV recombinants. Our findings corroborate with that of a very recent study from Pakistan and we here discuss epidemiological links between the CAB complexes reported in these two studies. Taken together, these observations signify a shifting epidemiology of CABs, and seem to correlate with the recent prediction of the 'third epidemic' of CLCuD in the Indian subcontinent.

Indexed as

Disease OutbreaksBegomovirusDNA, ViralGossypiumIndiaPakistanPlant DiseasesPlant LeavesSequence Analysis, DNADNA, Viral

Identifiers

PMID29234082
PMCPMC5727119

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.