Evidence map›Paper›PMID 29233960›Full record

ArticleNature communications2017

Multiplexed in vivo homology-directed repair and tumor barcoding enables parallel quantification of Kras variant oncogenicity.

Ian P Winters, Shin-Heng Chiou, Nicole K Paulk, Christopher D McFarland, Pranav V Lalgudi, Rosanna K Ma, Leszek Lisowski, Andrew J Connolly, Dmitri A Petrov, Mark A Kay and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
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  7. Article
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  9. Article
  10. Review
  11. Article
  12. Rat Models of Breast Cancer.Advances in experimental medicine and biology · 2025
    Review
  13. Article
  14. Review
  15. Deconstructing cancer with precision genome editing.Biochemical Society transactions · 2024
    Review
  16. Review
  17. Advances in Immunocompetent Mouse and Rat Models.Cold Spring Harbor perspectives in medicine · 2024
    Review
  18. Article
  19. Article
  20. Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Ian P WintersDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-3497-3228
Shin-Heng ChiouDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Nicole K PaulkDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-5557-6280
Christopher D McFarlandDepartment of Biology, Stanford University, Stanford, CA, 94305, USA.
Pranav V LalgudiDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0003-1653-2338
Rosanna K MaDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-8980-8940
Leszek LisowskiDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-4772-8651
Andrew J ConnollyDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Dmitri A PetrovDepartment of Biology, Stanford University, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-3664-9130
Mark A KayDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Monte M WinslowDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA. mwinslow@stanford.edu.ORCID http://orcid.org/0000-0002-5730-9573
Stanford University · USChildren's Medical Research Institute · AUStanford Medicine · US

Funding

Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Melinda L. Telli · 2007 to 2026
$71.4M
INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
HEPATIC GENE TRANSFER FOR TREATMENT OF HEMOPHILIAS A &BR01HL064274 · NHLBI · STANFORD UNIVERSITY · PI Mark A Kay · 2000 to 2026
$13.6M
Genomics of rapid adaptation in the lab and in the wildR35GM118165 · NIGMS · STANFORD UNIVERSITY · PI Dmitri Petrov · 2016 to 2026
$8.3M
Studies on RNAi Based Delivery in VivoR01DK078424 · NIDDK · STANFORD UNIVERSITY · PI KAY, MARK A · 2006 to 2014
$4.1M
Cancer Systems Biology Scholars ProgramR25CA180993 · NCI · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2014 to 2018
$2.2M
Molecular Dissection of Lung Cancer Progression and MetastasisR01CA175336 · NCI · STANFORD UNIVERSITY · PI WINSLOW, MONTE MEIER · 2013 to 2017
$1.7M
A Quantitative Multiplexed Platform for the Pharmacogenomic Analysis of Lung CancerR01CA207133 · NCI · STANFORD UNIVERSITY · PI PETROV, DMITRI, WINSLOW, MONTE MEIER · 2016 to 2018
$1.7M
Somatic Engineering-based Models of Pancreatic CancerR21CA194910 · NCI · STANFORD UNIVERSITY · PI WINSLOW, MONTE MEIER · 2015 to 2016
$390k
Novel strategies to expand the adeno-associated virus platform.F32HL119059 · NHLBI · STANFORD UNIVERSITY · PI PAULK, NICOLE K · 2014 to 2016
$119k
Functional Interrogation of Kdm6a-Dependent Tumor Suppression during Pancreatic CancerF31CA210627 · NCI · STANFORD UNIVERSITY · PI WINTERS, IAN PAUL · 2016 to 2017
$64k
NCI NIH HHS F31 CA210627NCI NIH HHS P30 CA124435NCI NIH HHS R01 CA175336NCI NIH HHS R01 CA207133NCI NIH HHS R21 CA194910NCI NIH HHS R25 CA180993NHGRI NIH HHS T32 HG000044NHLBI NIH HHS F32 HL119059NHLBI NIH HHS R01 HL064274NIDDK NIH HHS R01 DK078424NIGMS NIH HHS R35 GM118165
6 · The paper itself

Abstract

Large-scale genomic analyses of human cancers have cataloged somatic point mutations thought to initiate tumor development and sustain cancer growth. However, determining the functional significance of specific alterations remains a major bottleneck in our understanding of the genetic determinants of cancer. Here, we present a platform that integrates multiplexed AAV/Cas9-mediated homology-directed repair (HDR) with DNA barcoding and high-throughput sequencing to simultaneously investigate multiple genomic alterations in de novo cancers in mice. Using this approach, we introduce a barcoded library of non-synonymous mutations into hotspot codons 12 and 13 of Kras in adult somatic cells to initiate tumors in the lung, pancreas, and muscle. High-throughput sequencing of barcoded Kras

Indexed as

AnimalsCarcinogenesisCost-Benefit AnalysisCRISPR-Cas SystemsDNA Mutational AnalysisFeasibility StudiesFemaleGenomicsHigh-Throughput Nucleotide SequencingMaleMiceMutationNeoplasmsProto-Oncogene Proteins p21(ras)Recombinational DNA RepairReproducibility of ResultsHras protein, mouseProto-Oncogene Proteins p21(ras)

Identifiers

PMID29233960
PMCPMC5727199
OpenAlexW2774122316

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.