Evidence map›Paper›PMID 29232958›Full record

ArticleAIDS research and human retroviruses2018

ARCHITECT HIV Combo Ag/Ab and RealTime HIV-1 Assays Detect Diverse HIV Strains in Clinical Specimens.

Mary A Rodgers, Ana S Vallari, Julie Yamaguchi, Vera Holzmayer, Barbara Harris, Coumba Toure-Kane, Souleymane Mboup, Samar Badreddine, Carole McArthur, Nicaise Ndembi and 3 more

Abstract read
In one paragraph

Article in AIDS research and human retroviruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Revisiting the recombinant history of HIV-1 group M with dynamic network community detection.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Mary A Rodgers1 Infectious Disease Research, Abbott Diagnostics , Abbott Park, Illinois.
Ana S Vallari1 Infectious Disease Research, Abbott Diagnostics , Abbott Park, Illinois.
Julie Yamaguchi1 Infectious Disease Research, Abbott Diagnostics , Abbott Park, Illinois.
Vera Holzmayer1 Infectious Disease Research, Abbott Diagnostics , Abbott Park, Illinois.
Barbara Harris1 Infectious Disease Research, Abbott Diagnostics , Abbott Park, Illinois.
Coumba Toure-Kane2 Institut de Recherche en Santé, de Surveillance Epidemiologique et de Formations , Dakar, Senegal .
Souleymane Mboup2 Institut de Recherche en Santé, de Surveillance Epidemiologique et de Formations , Dakar, Senegal .
Samar Badreddine3 Infection Control Unit, King Faisal Specialist Hospital and Research Center , Jeddah, Saudi Arabia .
Carole McArthur4 Department of Oral and Craniofacial Sciences, School of Dentistry, University of Missouri-Kansas City , Kansas City, Missouri.
Nicaise Ndembi6 Laboratory Research Department, Institute of Human Virology , Abuja, Nigeria .
Dora Mbanya7 Department of Hematology, Université de Yaoundé I , Yaoundé, Cameroon .
Lazare Kaptue8 Laboratoire D'Hematologie, Université des Montagnes , Bangangté, Cameroon .
Gavin Cloherty1 Infectious Disease Research, Abbott Diagnostics , Abbott Park, Illinois.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Periodic evaluation of the impact of viral diversity on diagnostic tests is critical to ensure current technologies are keeping pace with viral evolution. To determine whether HIV diversity impacts the ARCHITECT HIV Combo Ag/Ab (HIV Combo) or RealTime HIV-1 (RT) assays, a set of N = 199 HIV clinical specimens from Cameroon, Senegal, Saudi Arabia, and Thailand were sequenced and tested in both assays. The panel included historical groups N and P specimens and a newly identified group N specimen. These and specimens classified as H, U (unclassified)/URF (unique recombinant form), CRF (circulating recombinant form) 01, 02, 06, 09, 11, 13, 18, 22, 37, and 43 were detected by both the RT assay (1.75-6.84 log copies/ml) and the HIV Combo assay (3.26-1121.96 sample to cutoff ratios). Sequence alignment identified 3 or fewer mismatches to the RT assay oligos in 82.4% of samples. Altogether, these data demonstrate the HIV Combo and RT assays detect diverse strains of HIV in clinical specimens.

Indexed as

AdultDiagnostic Tests, RoutineFemaleGenetic VariationHIV-1HIV AntibodiesHIV AntigensHIV Core Protein p24HIV InfectionsHumansMaleMiddle AgedRNA, ViralYoung AdultHIV AntibodiesHIV AntigensHIV Core Protein p24RNA, ViraldiagnosticsHIV diversitynucleic acid testserology

Identifiers

PMID29232958
PMCPMC5863103

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.