Evidence map›Paper›PMID 29232718›Full record

ArticlePLoS genetics2017

An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress.

Yingfang Zhu, Bangshing Wang, Kai Tang, Chuan-Chih Hsu, Shaojun Xie, Hai Du, Yuting Yang, Weiguo Andy Tao, Jian-Kang Zhu

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 2 pooled it
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 2 syntheses or guidelines pooled it, 104 citations in OpenAlex.

  1. Pooled it
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  13. Determination of Differential Alternative Splicing Under Stress Conditions.Methods in molecular biology (Clifton, N.J.) · 2024
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  18. CPR5-mediated nucleo-cytoplasmic localization of IAA12 and IAA19 controls lateral root development during abiotic stress.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Yingfang ZhuShanghai Center for Plant Stress Biology and CAS Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.ORCID 0000-0003-4757-8021
Bangshing WangDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN, United States of America.
Kai TangShanghai Center for Plant Stress Biology and CAS Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.ORCID 0000-0003-3913-6426
Chuan-Chih HsuDepartment of Biochemistry, Purdue University, West Lafayette, IN, United States of America.
Shaojun XieShanghai Center for Plant Stress Biology and CAS Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.
Hai DuDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN, United States of America.
Yuting YangDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN, United States of America.
Weiguo Andy TaoDepartment of Biochemistry, Purdue University, West Lafayette, IN, United States of America.ORCID 0000-0002-5535-5517
Jian-Kang ZhuShanghai Center for Plant Stress Biology and CAS Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.ORCID 0000-0001-5134-731X
Chinese Academy of Sciences · CNPurdue University West Lafayette · USSouthwest University · CN

Funding

CALCIUM SIGNALING--INTRACELL ION HOMEOSTASIS REGULATIONR01GM059138 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ZHU, JIAN-KANG · 1999 to 2015
$4.4M
NIGMS NIH HHS R01 GM059138NIH HHS R01GM059138
6 · The paper itself

Abstract

Several nucleoporins in the nuclear pore complex (NPC) have been reported to be involved in abiotic stress responses in plants. However, the molecular mechanism of how NPC regulates abiotic stress responses, especially the expression of stress responsive genes remains poorly understood. From a forward genetics screen using an abiotic stress-responsive luciferase reporter (RD29A-LUC) in the sickle-1 (sic-1) mutant background, we identified a suppressor caused by a mutation in NUCLEOPORIN 85 (NUP85), which exhibited reduced expression of RD29A-LUC in response to ABA and salt stress. Consistently, the ABA and salinity induced expression of several stress responsive genes such as RD29A, COR15A and COR47 was significantly compromised in nup85 mutants and other nucleoporin mutants such as nup160 and hos1. Subsequently, Immunoprecipitation and mass spectrometry analysis revealed that NUP85 is potentially associated with HOS1 and other nucleoporins within the nup107-160 complex, along with several mediator subunits. We further showed that there is a direct physical interaction between MED18 and NUP85. Similar to NUP85 mutations, MED18 mutation was also found to attenuate expression of stress responsive genes. Taken together, we not only revealed the involvement of NUP85 and other nucleoporins in regulating ABA and salt stress responses, but also uncovered a potential relation between NPC and mediator complex in modulating the gene expression in plants.

Indexed as

Abscisic AcidArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantIntracellular Signaling Peptides and ProteinsMediator ComplexMutationNuclear Pore Complex ProteinsNuclear ProteinsOsmotic PressurePlants, Genetically ModifiedSalinityStress, PhysiologicalAbscisic AcidArabidopsis ProteinsCOR15 protein, ArabidopsisCOR47 protein, ArabidopsisHOS1 protein, ArabidopsisIntracellular Signaling Peptides and ProteinsMED18 protein, ArabidopsisMediator ComplexNuclear Pore Complex ProteinsNuclear ProteinsNUP85 protein, ArabidopsisRD29a protein, Arabidopsis

Identifiers

PMID29232718
PMCPMC5741264
OpenAlexW2774888418

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.