Evidence map›Paper›PMID 29231920›Full record

ArticleScientific data2017

Two-colour serial femtosecond crystallography dataset from gadoteridol-derivatized lysozyme for MAD phasing.

Alexander Gorel, Koji Motomura, Hironobu Fukuzawa, R Bruce Doak, Marie Luise Grünbein, Mario Hilpert, Ichiro Inoue, Marco Kloos, Gabriela Nass Kovács, Eriko Nango and 12 more

Abstract read
In one paragraph

Article in Scientific data, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. High-throughput in situ experimental phasing.Acta crystallographica. Section D, Structural biology · 2020
    Article
  2. SPIND-TC: an indexing method for two-color X-ray diffraction data.Acta crystallographica. Section A, Foundations and advances · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Alexander GorelMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.
Koji MotomuraInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan.
Hironobu FukuzawaInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan.
R Bruce DoakMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.
Marie Luise GrünbeinMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.
Mario HilpertMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.
Ichiro InoueRIKEN SPring-8 Center, Kouto 1-1-1, Sayo, Hyogo 679-5148, Japan.
Marco KloosMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.
Gabriela Nass KovácsMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.
Eriko NangoRIKEN SPring-8 Center, Kouto 1-1-1, Sayo, Hyogo 679-5148, Japan.
Karol NassMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.
Christopher M RoomeMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.
Robert L ShoemanMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.
Rie TanakaRIKEN SPring-8 Center, Kouto 1-1-1, Sayo, Hyogo 679-5148, Japan.
Kensuke TonoJapan Synchrotron Radiation Research Institute, Kouto 1-1-1, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan.
Lutz FoucarMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.
Yasumasa JotiJapan Synchrotron Radiation Research Institute, Kouto 1-1-1, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan.
Makina YabashiRIKEN SPring-8 Center, Kouto 1-1-1, Sayo, Hyogo 679-5148, Japan.ORCID 0000-0002-2472-1684
So IwataRIKEN SPring-8 Center, Kouto 1-1-1, Sayo, Hyogo 679-5148, Japan.
Kiyoshi UedaInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan.
Thomas R M BarendsMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.
Ilme SchlichtingMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We provide a detailed description of a gadoteridol-derivatized lysozyme (gadolinium lysozyme) two-colour serial femtosecond crystallography (SFX) dataset for multiple wavelength anomalous dispersion (MAD) structure determination. The data was collected at the Spring-8 Angstrom Compact free-electron LAser (SACLA) facility using a two-colour double-pulse beam to record two diffraction patterns simultaneously in one diffraction image. Gadolinium lysozyme was chosen as a well-established model system that has a very strong anomalous signal. Diffraction patterns from gadolinium lysozyme microcrystals were recorded to a resolution of 1.9 Å in both colours. This dataset is publicly available through the Coherent X-ray Imaging Data Bank (CXIDB) as a resource for algorithm development.

Identifiers

PMID29231920
PMCPMC5726314

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.