Evidence map›Paper›PMID 29230547›Full record

ArticleProtoplasma2018

Novel fluorochromes label tonoplast in living plant cells and reveal changes in vacuolar organization after treatment with protein phosphatase inhibitors.

Miklós Nagy, Sándor Kéki, Dávid Rácz, Jaideep Mathur, György Vereb, Tamás Garda, Márta M-Hamvas, François Chaumont, Károly Bóka, Béla Böddi and 3 more

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Article in Protoplasma, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Miklós NagyFaculty of Science and Technology, Department of Applied Chemistry, University of Debrecen, Egyetem tér 1, Debrecen, H-4032, Hungary.
Sándor KékiFaculty of Science and Technology, Department of Applied Chemistry, University of Debrecen, Egyetem tér 1, Debrecen, H-4032, Hungary.
Dávid RáczFaculty of Science and Technology, Department of Applied Chemistry, University of Debrecen, Egyetem tér 1, Debrecen, H-4032, Hungary.
Jaideep MathurDepartment of Molecular and Cellular Biology, Laboratory of Plant Development and Interactions, University of Guelph, 50 Stone Road, Guelph, ON, N1G2W1, Canada.
György VerebFaculty of Medicine, Department of Biophysics and Cell Biology, University of Debrecen, Debrecen, Hungary.
Tamás GardaFaculty of Science and Technology, Department of Botany, University of Debrecen, Debrecen, Hungary.
Márta M-HamvasFaculty of Science and Technology, Department of Botany, University of Debrecen, Debrecen, Hungary.
François ChaumontInstitut des Sciences de la Vie, Université catholique de Louvain, B-1348, Louvain-la-Neuve, Belgium.
Károly BókaELTE Eötvös Loránd University, Department of Plant Anatomy, Institute of Biology, Faculty of Science, Pázmány P. s. 1/c, Budapest, H-1117, Hungary.
Béla BöddiELTE Eötvös Loránd University, Department of Plant Anatomy, Institute of Biology, Faculty of Science, Pázmány P. s. 1/c, Budapest, H-1117, Hungary.
Csongor FreytagFaculty of Science and Technology, Department of Botany, University of Debrecen, Debrecen, Hungary.
Gábor VasasFaculty of Science and Technology, Department of Botany, University of Debrecen, Debrecen, Hungary.
Csaba MáthéFaculty of Science and Technology, Department of Botany, University of Debrecen, Debrecen, Hungary. mathe.csaba@science.unideb.hu.
University of Debrecen · HUEötvös Loránd University · HUUCLouvain · BEUniversity of Guelph · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The recently synthesized isocyanonaphtalene derivatives ACAIN and CACAIN are fluorochromes excitable at wavelengths of around 366 nm and bind cysteine-rich proteins with hydrophobic motifs. We show that these compounds preferentially label tonoplasts in living Arabidopsis and tobacco (Nicotiana tabacum SR1) cells. ACAIN-labeled membranes co-localized with the GFP signal in plants expressing GFP-δ-TIP (TIP2;1) (a tonoplast aquaporin) fusion protein. ACAIN preserved the dynamics of vacuolar structures. tip2;1 and triple tip1;1-tip1;2-tip2;1 knockout mutants showed weaker ACAIN signal in tonoplasts. The fluorochrome is also suitable for the labeling and detection of specific (cysteine-rich, hydrophobic) proteins from crude cell protein extracts following SDS-PAGE and TIP mutants show altered labeling patterns; however, it appears that ACAIN labels a large variety of tonoplast proteins. ACAIN/CACAIN could be used for the detection of altered vacuolar organization induced by the heptapeptide natural toxin microcystin-LR (MCY-LR), a potent inhibitor of both type 1 and 2A protein phosphatases and a ROS inducer. As revealed both in plants with GFP-TIP2;1 fusions and in wild-type (Columbia) plants labeled with ACAIN/CACAIN, MCY-LR induces the formation of small vesicles, concomitantly with the absence of the large vegetative vacuoles characteristic for differentiated cells. TEM studies of MCY-LR-treated Arabidopsis cells proved the presence of multimembrane vesicles, with characteristics of lytic vacuoles or autophagosomes. Moreover, MCY-LR is a stronger inducer of small vesicle formation than okadaic acid (which inhibits preferentially PP2A) and tautomycin (which inhibits preferentially PP1). ACAIN and CACAIN emerge as useful novel tools to study plant vacuole biogenesis and programmed cell death.

Indexed as

ArabidopsisEnzyme InhibitorsFluorescent DyesGreen Fluorescent ProteinsNicotianaPhosphoprotein PhosphatasesPlant CellsPlant ProteinsSeedlingsStaining and LabelingVacuolesEnzyme InhibitorsFluorescent DyesGreen Fluorescent ProteinsPhosphoprotein PhosphatasesPlant ProteinsACAIN/CACAINArabidopsisHypocotylMicrocystin-LRTonoplastVacuolar organization

Identifiers

PMID29230547
OpenAlexW2771325575

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.