Evidence map›Paper›PMID 29229913›Full record

ArticleScientific reports2017

A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148.

Angel Angelov, Vu Thuy Trang Pham, Maria Übelacker, Silja Brady, Benedikt Leis, Nicole Pill, Judith Brolle, Matthias Mechelke, Matthias Moerch, Bernard Henrissat and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

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  9. Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Angel AngelovDepartment of Microbiology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan, Germany.
Vu Thuy Trang PhamDepartment of Microbiology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan, Germany.
Maria ÜbelackerDepartment of Microbiology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan, Germany.
Silja BradyDepartment of Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Georg-August University Göttingen, Göttingen, Germany.
Benedikt LeisDepartment of Microbiology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan, Germany.
Nicole PillDepartment of Microbiology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan, Germany.
Judith BrolleDepartment of Microbiology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan, Germany.
Matthias MechelkeDepartment of Microbiology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan, Germany.
Matthias MoerchDepartment of Microbiology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan, Germany.
Bernard HenrissatArchitecture et Function des Macromolécules Biologiques, CNRS, Aix-Marseille University, Marseille, France.
Wolfgang LieblDepartment of Microbiology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan, Germany. wliebl@wzw.tum.de.
Weihenstephan-Triesdorf University of Applied Sciences · DETechnical University of Munich · DEAix-Marseille Université · FRUniversity of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The discovery of novel and robust enzymes for the breakdown of plant biomass bears tremendous potential for the development of sustainable production processes in the rapidly evolving new bioeconomy. By functional screening of a metagenomic library from a volcano soil sample a novel thermostable endo-β-glucanase (EngU) which is unusual with regard to its module architecture and cleavage specificity was identified. Various recombinant EngU variants were characterized. Assignment of EngU to an existing glycoside hydrolase (GH) family was not possible. Two regions of EngU showed weak sequence similarity to proteins of the GH clan GH-A, and acidic residues crucial for catalytic activity of EngU were identified by mutation. Unusual, a carbohydrate-binding module (CBM4) which displayed binding affinity for β-glucan, lichenin and carboxymethyl-cellulose was found as an insertion between these two regions. EngU hydrolyzed β-1,4 linkages in carboxymethyl-cellulose, but displayed its highest activity with mixed linkage (β-1,3-/β-1,4-) glucans such as barley β-glucan and lichenin, where in contrast to characterized lichenases cleavage occurred predominantly at the β-1,3 linkages of C4-substituted glucose residues. EngU and numerous related enzymes with previously unknown function represent a new GH family of biomass-degrading enzymes within the GH-A clan. The name assigned to the new GH family is GH148.

Indexed as

MetagenomeEnzyme StabilityEscherichia coliEscherichia coli ProteinsGlucansGlycoside HydrolasesModels, MolecularOligosaccharidesSoil MicrobiologySubstrate SpecificityTemperatureEscherichia coli ProteinsGlucansGlycoside HydrolasesOligosaccharides

Identifiers

PMID29229913
PMCPMC5725463
OpenAlexW2774264119

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.