Evidence map›Paper›PMID 29229908›Full record

ArticleNature communications2017

Identification of regulatory targets for the bacterial Nus factor complex.

Gabriele Baniulyte, Navjot Singh, Courtney Benoit, Richard Johnson, Robert Ferguson, Mauricio Paramo, Anne M Stringer, Ashley Scott, Pascal Lapierre, Joseph T Wade

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Extraribosomal Functions of Bacterial Ribosomal Proteins-An Update, 2023.International journal of molecular sciences · 2024
    Review
  8. σeLife · 2023
    Article
  9. Article
  10. Review
  11. Regulatory roles ofeLife · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Processive Antitermination.Microbiology spectrum · 2018
    Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Gabriele BaniulyteWadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.
Navjot SinghWadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.
Courtney BenoitWadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.
Richard JohnsonWadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.
Robert FergusonWadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.
Mauricio ParamoWadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.ORCID http://orcid.org/0000-0002-9518-1881
Anne M StringerWadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.
Ashley ScottWadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.
Pascal LapierreWadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.
Joseph T WadeWadsworth Center, New York State Department of Health, Albany, NY, 12208, USA. joseph.wade@health.ny.gov.
New York State Department of Health · US

Funding

Pervasive transcription in bacterial genomesDP2OD007188 · OD · WADSWORTH CENTER · PI WADE, JOSEPH THOMAS · 2010 to 2010
$2.4M
NIH HHS DP2 OD007188
6 · The paper itself

Abstract

Nus factors are broadly conserved across bacterial species, and are often essential for viability. A complex of five Nus factors (NusB, NusE, NusA, NusG and SuhB) is considered to be a dedicated regulator of ribosomal RNA folding, and has been shown to prevent Rho-dependent transcription termination. Here, we identify an additional cellular function for the Nus factor complex in Escherichia coli: repression of the Nus factor-encoding gene, suhB. This repression occurs primarily by translation inhibition, followed by Rho-dependent transcription termination. Thus, the Nus factor complex can prevent or promote Rho activity depending on the gene context. Conservation of putative NusB/E binding sites upstream of Nus factor genes suggests that Nus factor autoregulation occurs in many bacterial species. Additionally, many putative NusB/E binding sites are also found upstream of other genes in diverse species, and we demonstrate Nus factor regulation of one such gene in Citrobacter koseri. We conclude that Nus factors have an evolutionarily widespread regulatory function beyond ribosomal RNA, and that they are often autoregulatory.

Indexed as

Gene Expression Regulation, BacterialRNA FoldingBase SequenceBinding SitesEscherichia coliEscherichia coli ProteinsPeptide Elongation FactorsPhosphoric Monoester HydrolasesProtein BindingRibosomal ProteinsRNA, RibosomalSequence Homology, Nucleic AcidTranscriptional Elongation FactorsTranscription FactorsEscherichia coli ProteinsnusA protein, E coliNusB protein, E coliNusG protein, E coliPeptide Elongation FactorsPhosphoric Monoester HydrolasesRibosomal Proteinsribosomal protein S10RNA, RibosomalSuhB protein, E coliTranscriptional Elongation FactorsTranscription Factors

Identifiers

PMID29229908
PMCPMC5725501
OpenAlexW2771917179

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.