Evidence map›Paper›PMID 29229763›Full record

ArticleThe Biochemical journal2018

Assaying kinase activity of the TPL-2/NF-κB1 p105/ABIN-2 complex using an optimal peptide substrate.

Sandra Kümper, Thorsten Gantke, Chao-Sheng Chen, Yasmina Soneji, Michael J Pattison, Probir Chakravarty, Svend Kjær, Daniel Thomas, Carl Haslam, Bill J Leavens and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 82% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Sandra KümperCrick-GSK Biomedical LinkLabs, GlaxoSmithKline, Stevenage SG1 2NY, U.K.
Thorsten GantkeImmune Cell Signalling Laboratory, The Francis Crick Institute, London NW1 1AT, U.K.
Chao-Sheng ChenImmune Cell Signalling Laboratory, The Francis Crick Institute, London NW1 1AT, U.K.
Yasmina SonejiImmune Cell Signalling Laboratory, The Francis Crick Institute, London NW1 1AT, U.K.
Michael J PattisonImmune Cell Signalling Laboratory, The Francis Crick Institute, London NW1 1AT, U.K.
Probir ChakravartyBioinformatics and Biostatistics, The Francis Crick Institute, London NW1 1AT, U.K.
Svend KjærStructural Biology, Science Technology Platforms, The Francis Crick Institute, London NW1 1AT, U.K.
Daniel ThomasRD Platform Technology & Science, GlaxoSmithKline, Stevenage SG1 2NY, U.K.
Carl HaslamRD Platform Technology & Science, GlaxoSmithKline, Stevenage SG1 2NY, U.K.
Bill J LeavensRD Platform Technology & Science, GlaxoSmithKline, Stevenage SG1 2NY, U.K.
David HouseCrick-GSK Biomedical LinkLabs, GlaxoSmithKline, Stevenage SG1 2NY, U.K.
David J PowellCrick-GSK Biomedical LinkLabs, GlaxoSmithKline, Stevenage SG1 2NY, U.K.
Steven C LeyImmune Cell Signalling Laboratory, The Francis Crick Institute, London NW1 1AT, U.K. steve.ley@crick.ac.uk.
GlaxoSmithKline (United Kingdom) · GB

Funding

Medical Research Council MC_U117584209
6 · The paper itself

Abstract

The MKK1/2 kinase tumour progression locus 2 (TPL-2) is critical for the production of tumour necrosis factor alpha (TNFα) in innate immune responses and a potential anti-inflammatory drug target. Several earlier pharmaceutical company screens with the isolated TPL-2 kinase domain have identified small-molecule inhibitors that specifically block TPL-2 signalling in cells, but none of these have progressed to clinical development. We have previously shown that TPL-2 catalytic activity regulates TNF production by macrophages while associated with NF-κB1 p105 and ABIN-2, independently of MKK1/2 phosphorylation via an unknown downstream substrate. In the present study, we used a positional scanning peptide library to determine the optimal substrate specificity of a complex of TPL-2, NF-κB1 p105 and ABIN-2. Using an optimal peptide substrate based on this screen and a high-throughput mass spectrometry assay to monitor kinase activity, we found that the TPL-2 complex has significantly altered sensitivities versus existing ATP-competitive TPL-2 inhibitors than the isolated TPL-2 kinase domain. These results imply that screens with the more physiologically relevant TPL-2/NF-κB1 p105/ABIN-2 complex have the potential to deliver novel TPL-2 chemical series; both ATP-competitive and allosteric inhibitors could emerge with significantly improved prospects for development as anti-inflammatory drugs.

Indexed as

Adaptor Proteins, Signal TransducingAmino Acid SequenceAnti-Inflammatory AgentsGene ExpressionHEK293 CellsHigh-Throughput Screening AssaysHumansMAP Kinase Kinase KinasesNF-kappa B p50 SubunitPeptide LibraryPeptidesProtein BindingProtein Kinase InhibitorsProto-Oncogene ProteinsRecombinant ProteinsStructure-Activity RelationshipAdaptor Proteins, Signal TransducingAnti-Inflammatory AgentsMAP3K8 protein, humanMAP Kinase Kinase KinasesNF-kappa B p50 SubunitPeptide LibraryPeptidesProtein Kinase InhibitorsProto-Oncogene ProteinsRecombinant ProteinsTNIP2 protein, humanhigh-throughput assayinflammationkinaseTPL-2

Identifiers

PMID29229763
PMCPMC5763956
OpenAlexW2775385957

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.