Evidence map›Paper›PMID 29228311›Full record

ArticleProtein engineering, design & selection : PEDS2017

A new method for post-translationally labeling proteins in live cells for fluorescence imaging and tracking.

M Hinrichsen, M Lenz, J M Edwards, O K Miller, S G J Mochrie, P S Swain, U Schwarz-Linek, L Regan

Abstract read
In one paragraph

Article in Protein engineering, design & selection : PEDS, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Experimental Approaches to Visualize Effector Protein Translocation During Host-Pathogen Interactions.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. PAINT using proteins: A new brush for super-resolution artists.Protein science : a publication of the Protein Society · 2020
    Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

M HinrichsenDepartment of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Avenue, New Haven, CT06511, USA.
M LenzSynthSys-Synthetic and Systems Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.
J M EdwardsBiomedical Sciences Research Complex and School of Biology, University of St Andrews, North Haugh, St AndrewsKY16 9ST, UK.
O K MillerBiomedical Sciences Research Complex and School of Biology, University of St Andrews, North Haugh, St AndrewsKY16 9ST, UK.
S G J MochrieIntegrated Graduate Program in Physical and Engineering Biology, Yale University, New Haven, CT 06511, USA.
P S SwainSynthSys-Synthetic and Systems Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.
U Schwarz-LinekBiomedical Sciences Research Complex and School of Biology, University of St Andrews, North Haugh, St AndrewsKY16 9ST, UK.
L ReganDepartment of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Avenue, New Haven, CT 06511, USA.

Funding

Systems analysis of phenotypic switch in control of cancer invasionU54CA209992 · NCI · YALE UNIVERSITY · PI LEVCHENKO, ANDRE · 2016 to 2021
$10.1M
Designed proteins to study and modulate cellular processesR01GM118528 · NIGMS · YALE UNIVERSITY · PI MOCHRIE, SIMON · 2017 to 2020
$1.2M
Medical Research Council MR/K001485/1NCI NIH HHS U54 CA209992NIGMS NIH HHS R01 GM118528NIH HHS CA209992NIH HHS GM118528
6 · The paper itself

Abstract

We present a novel method to fluorescently label proteins, post-translationally, within live Saccharomycescerevisiae. The premise underlying this work is that fluorescent protein (FP) tags are less disruptive to normal processing and function when they are attached post-translationally, because target proteins are allowed to fold properly and reach their final subcellular location before being labeled. We accomplish this post-translational labeling by expressing the target protein fused to a short peptide tag (SpyTag), which is then covalently labeled in situ by controlled expression of an open isopeptide domain (SpyoIPD, a more stable derivative of the SpyCatcher protein) fused to an FP. The formation of a covalent bond between SpyTag and SpyoIPD attaches the FP to the target protein. We demonstrate the general applicability of this strategy by labeling several yeast proteins. Importantly, we show that labeling the membrane protein Pma1 in this manner avoids the mislocalization and growth impairment that occur when Pma1 is genetically fused to an FP. We also demonstrate that this strategy enables a novel approach to spatiotemporal tracking in single cells and we develop a Bayesian analysis to determine the protein's turnover time from such data.

Indexed as

Protein Processing, Post-TranslationalCell TrackingFluorescent DyesProtein EngineeringSaccharomyces cerevisiaeSingle-Cell AnalysisSpectrometry, FluorescenceFluorescent Dyesmembrane proteinprotein engineeringS. cerevisiaesingle cellSpyCatcher-SpyTag

Identifiers

PMID29228311
PMCPMC6680098

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.