Evidence map›Paper›PMID 29228058›Full record

ArticlePloS one2017

Altered intragenic DNA methylation of HOOK2 gene in adipose tissue from individuals with obesity and type 2 diabetes.

Sandra Rodríguez-Rodero, Edelmiro Menéndez-Torre, Gustavo Fernández-Bayón, Paula Morales-Sánchez, Lourdes Sanz, Estrella Turienzo, Juan José González, Ceferino Martinez-Faedo, Lorena Suarez-Gutiérrez, Jessica Ares and 5 more

Open access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

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  14. Anti-Obesity Effects of Medicinal and Edible Mushrooms.Molecules (Basel, Switzerland) · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Sandra Rodríguez-RoderoEndocrinology and Nutrition Department, Hospital Universitario Central de Asturias (HUCA), Asturias, Spain.
Edelmiro Menéndez-TorreEndocrinology and Nutrition Department, Hospital Universitario Central de Asturias (HUCA), Asturias, Spain.
Gustavo Fernández-BayónCancer Epigenetics Laboratory, Institute of Oncology of Asturias (IUOPA), HUCA, Universidad de Oviedo, Asturias, Spain.
Paula Morales-SánchezEndocrinology and Nutrition Department, Hospital Universitario Central de Asturias (HUCA), Asturias, Spain.
Lourdes SanzSurgery Department, Hospital Universitario Central de Asturias, Asturias, Spain.
Estrella TurienzoSurgery Department, Hospital Universitario Central de Asturias, Asturias, Spain.
Juan José GonzálezSurgery Department, Hospital Universitario Central de Asturias, Asturias, Spain.
Ceferino Martinez-FaedoEndocrinology and Nutrition Department, Hospital Universitario Central de Asturias (HUCA), Asturias, Spain.
Lorena Suarez-GutiérrezEndocrinology and Nutrition Department, Hospital Universitario Central de Asturias (HUCA), Asturias, Spain.
Jessica AresEndocrinology and Nutrition Department, Hospital Universitario Central de Asturias (HUCA), Asturias, Spain.
Lucia Díaz-NayaEndocrinology and Nutrition Department, Hospital Universitario Central de Asturias (HUCA), Asturias, Spain.
Alicia Martin-NietoEndocrinology and Nutrition Department, Hospital Universitario Central de Asturias (HUCA), Asturias, Spain.
Juan L Fernández-MoreraEndocrinology and Nutrition Department, Hospital Universitario Central de Asturias (HUCA), Asturias, Spain.
Mario F FragaEndocrinology, Nutrition, Diabetes and Obesity Unit, Instituto de Investigación Sanitaria del Principado de Asturias (ISPA), Oviedo, Asturias, Spain.
Elías Delgado-ÁlvarezEndocrinology and Nutrition Department, Hospital Universitario Central de Asturias (HUCA), Asturias, Spain.ORCID http://orcid.org/0000-0001-6114-9712
Hospital Universitario Central de Asturias · ESUniversidad de Oviedo · ESNanomaterials and Nanotechnology Research Center · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aims/hypothesisFailure in glucose response to insulin is a common pathology associated with obesity. In this study, we analyzed the genome wide DNA methylation profile of visceral adipose tissue (VAT) samples in a population of individuals with obesity and assessed whether differential methylation profiles are associated with the presence of type 2 diabetes (T2D).

methodsMore than 485,000 CpG genome sites from VAT samples from women with obesity undergoing gastric bypass (n = 18), and classified as suffering from type 2 diabetes (T2D) or not (no type 2 diabetes, NT2D), were analyzed using DNA methylation arrays.

resultsWe found significant differential methylation between T2D and NT2D samples in 24 CpGs that map with sixteen genes, one of which, HOOK2, demonstrated a significant correlation between differentially hypermethylated regions on the gene body and the presence of type 2 diabetes. This was validated by pyrosequencing in a population of 91 samples from both males and females with obesity. Furthermore, when these results were analyzed by gender, female T2D samples were found hypermethylated at the cg04657146-region and the cg 11738485-region of HOOK2 gene, whilst, interestingly, male samples were found hypomethylated in this latter region.

conclusionThe differential methylation profile of the HOOK2 gene in individuals with T2D and obesity might be related to the attendant T2D, but further studies are required to identify the potential role of HOOK2 gene in T2D disease. The finding of gender differences in T2D methylation of HOOK2 also warrants further investigation.

Indexed as

DNA MethylationAdipose TissueCohort StudiesDiabetes Mellitus, Type 2FemaleHumansMaleMicrotubule-Associated ProteinsObesityHook2 protein, humanMicrotubule-Associated Proteins

Identifiers

PMID29228058
PMCPMC5724849
OpenAlexW2773459956

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.