Evidence map›Paper›PMID 29227829›Full record

ArticleBlood cells, molecules & diseases2018

A long noncoding RNA from the HBS1L-MYB intergenic region on chr6q23 regulates human fetal hemoglobin expression.

Tasha A Morrison, Ibifiri Wilcox, Hong-Yuan Luo, John J Farrell, Ryo Kurita, Yukio Nakamura, George J Murphy, Shuaiying Cui, Martin H Steinberg, David H K Chui

Abstract read
In one paragraph

Article in Blood cells, molecules & diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 46 citations in OpenAlex.

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  11. An enhancer RNA recruits MLL1 to regulate transcription ofbioRxiv : the preprint server for biology · 2023
    Article
  12. Negative regulation ofTranslational pediatrics · 2023
    Article
  13. Review
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  16. Expression, functional mechanism and therapy application of long noncoding RNA inZhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Tasha A MorrisonDepartment of Medicine, Section of Hematology-Oncology, Boston University School of Medicine, Boston, MA 02118, USA.
Ibifiri WilcoxDepartment of Medicine, Section of Hematology-Oncology, Boston University School of Medicine, Boston, MA 02118, USA.
Hong-Yuan LuoDepartment of Medicine, Section of Hematology-Oncology, Boston University School of Medicine, Boston, MA 02118, USA.
John J FarrellDepartment of Medicine, Section of Biomedical Genetics, Boston University School of Medicine, Boston, MA 02118, USA.
Ryo KuritaResearch and Development Department, Central Blood Institute, Blood Service Headquarters, Japanese Red Cross Society, Tokyo, Japan.
Yukio NakamuraCell Engineering Division, RIKEN BioResource Center, Ibaraki, Japan.
George J MurphyDepartment of Medicine, Section of Hematology-Oncology, Boston University School of Medicine, Boston, MA 02118, USA.
Shuaiying CuiDepartment of Medicine, Section of Hematology-Oncology, Boston University School of Medicine, Boston, MA 02118, USA.
Martin H SteinbergDepartment of Medicine, Section of Hematology-Oncology, Boston University School of Medicine, Boston, MA 02118, USA; Department of Pathology and Laboratory Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
David H K ChuiDepartment of Medicine, Section of Hematology-Oncology, Boston University School of Medicine, Boston, MA 02118, USA; Department of Pathology and Laboratory Medicine, Boston University School of Medicine, Boston, MA 02118, USA. Electronic address: david.chui@bmc.org.
Boston University · USJapanese Red Cross Society, Japan · JPRIKEN BioResource Research Center · JP

Funding

Globin Gene Expression in Sickle Cell Genotype-Specific iPS cellsU01HL107443 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI CHUI, DAVID H K, MOSTOSLAVSKY, GUSTAVO · 2011 to 2015
$8.3M
RESEARCH TRAINING IN BLOOD DISEASES AND RESOURCEST32HL007501 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI LERNER, ADAM, STEINBERG, MARTIN H. · 1985 to 2018
$5.4M
Mechanisms of cis-acting HbF regulation in sickle cell anemiaR01HL133350 · NHLBI · BOSTON MEDICAL CENTER · PI MURPHY, GEORGE J, STEINBERG, MARTIN H. · 2017 to 2020
$1.7M
The Role of Long Noncoding RNAs in HbF Variance in Induced Pluripotent Stem Cell-Derived Erythroid Cells from Patients with Sickle Cell AnemiaF31HL126462 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MORRISON, TASHA ALEASE · 2015 to 2017
$56k
NHLBI NIH HHS F31 HL126462NHLBI NIH HHS R01 HL133350NHLBI NIH HHS T32 HL007501NHLBI NIH HHS U01 HL107443
6 · The paper itself

Abstract

The HBS1L-MYB intergenic region (chr6q23) regulates erythroid cell proliferation, maturation, and fetal hemoglobin (HbF) expression. An enhancer element within this locus, highlighted by a 3-bp deletion polymorphism (rs66650371), is known to interact with the promoter of the neighboring gene, MYB, to increase its expression, thereby regulating HbF production. RNA polymerase II binding and a 50-bp transcript from this enhancer region reported in ENCODE datasets suggested the presence of a long noncoding RNA (lncRNA). We characterized a novel 1283bp transcript (HMI-LNCRNA; chr6:135,096,362-135,097,644; hg38) that was transcribed from the enhancer region of MYB. Within erythroid cells, HMI-LNCRNA was almost exclusively present in nucleus, and was much less abundant than the mRNA for MYB. HMI-LNCRNA expression was significantly higher in erythroblasts derived from cultured adult peripheral blood CD34

Indexed as

Chromosomes, Human, Pair 6Gene Expression RegulationGenes, mybRNA, Long NoncodingBase SequenceCell DifferentiationCell LineDNA, IntergenicErythroblastsErythroid CellsFetal HemoglobinGene Knockdown TechniquesGTP-Binding ProteinsHematopoietic Stem CellsHumansQuantitative Trait LociDNA, IntergenicFetal HemoglobinGTP-Binding ProteinsHBS1L protein, humanRNA, Long NoncodingHbF quantitative trait lociLong noncoding RNARegulation of HbF expression

Identifiers

PMID29227829
PMCPMC5783741
OpenAlexW2774039072

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.