Evidence map›Paper›PMID 29223136›Full record

ArticlePlant biotechnology journal2018

Allele exchange at the EPSPS locus confers glyphosate tolerance in cassava.

Aaron W Hummel, Raj Deepika Chauhan, Tomas Cermak, Andrew M Mutka, Anupama Vijayaraghavan, Adam Boyher, Colby G Starker, Rebecca Bart, Daniel F Voytas, Nigel J Taylor

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
21.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 177 citations in OpenAlex.

  1. Article
  2. Article
  3. Advances in CRISPR Plant Applications.International journal of molecular sciences · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Beyond a few bases: methods for large DNA insertion and gene targeting in plants.The Plant journal : for cell and molecular biology · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Evolving dual-trait EPSP synthase variants using a synthetic yeast selection system.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Article
  19. Review
  20. Review

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Aaron W HummelDepartment of Genetics, Cell Biology, & Development and Center for Genome Engineering, University of Minnesota, Minneapolis, MN, USA.
Raj Deepika ChauhanDonald Danforth Plant Science Center, St. Louis, MO, USA.
Tomas CermakDepartment of Genetics, Cell Biology, & Development and Center for Genome Engineering, University of Minnesota, Minneapolis, MN, USA.
Andrew M MutkaDonald Danforth Plant Science Center, St. Louis, MO, USA.
Anupama VijayaraghavanDonald Danforth Plant Science Center, St. Louis, MO, USA.
Adam BoyherDonald Danforth Plant Science Center, St. Louis, MO, USA.
Colby G StarkerDepartment of Genetics, Cell Biology, & Development and Center for Genome Engineering, University of Minnesota, Minneapolis, MN, USA.
Rebecca BartDonald Danforth Plant Science Center, St. Louis, MO, USA.
Daniel F VoytasDepartment of Genetics, Cell Biology, & Development and Center for Genome Engineering, University of Minnesota, Minneapolis, MN, USA.
Nigel J TaylorDonald Danforth Plant Science Center, St. Louis, MO, USA.ORCID 0000-0002-5426-2247
Donald Danforth Plant Science Center · USUniversity of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Effective weed control can protect yields of cassava (Manihot esculenta) storage roots. Farmers could benefit from using herbicide with a tolerant cultivar. We applied traditional transgenesis and gene editing to generate robust glyphosate tolerance in cassava. By comparing promoters regulating expression of transformed 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) genes with various paired amino acid substitutions, we found that strong constitutive expression is required to achieve glyphosate tolerance during in vitro selection and in whole cassava plants. Using strategies that exploit homologous recombination (HR) and nonhomologous end-joining (NHEJ) DNA repair pathways, we precisely introduced the best-performing allele into the cassava genome, simultaneously creating a promoter swap and dual amino acid substitutions at the endogenous EPSPS locus. Primary EPSPS-edited plants were phenotypically normal, tolerant to high doses of glyphosate, with some free of detectable T-DNA integrations. Our methods demonstrate an editing strategy for creating glyphosate tolerance in crop plants and demonstrate the potential of gene editing for further improvement of cassava.

Indexed as

3-Phosphoshikimate 1-CarboxyvinyltransferaseAllelesGenes, PlantGenetic EngineeringGenetic LociGlycineGlyphosateHerbicide ResistanceHerbicidesManihotPlants, Genetically Modified3-Phosphoshikimate 1-CarboxyvinyltransferaseGlycineGlyphosateHerbicidescassavagene editinggene replacementherbicide tolerance

Identifiers

PMID29223136
PMCPMC5999311
OpenAlexW2771175758

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.