Evidence map›Paper›PMID 29222611›Full record

ArticlePlant molecular biology2018

Kiwifruit SVP2 controls developmental and drought-stress pathways.

Rongmei Wu, Tianchi Wang, Ben A W Warren, Susan J Thomson, Andrew C Allan, Richard C Macknight, Erika Varkonyi-Gasic

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Molecular advances in bud dormancy in trees.Journal of experimental botany · 2024
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. A MADS-Box GeneInternational journal of molecular sciences · 2021
    Article
  13. Article
  14. Genome-Wide Analysis ofFrontiers in plant science · 2021
    Article
  15. Review
  16. I Want to (Bud) Break Free: The Potential Role ofFrontiers in plant science · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Rongmei WuThe New Zealand Institute for Plant and Food Research Limited (PFR) Mt Albert, Auckland Mail Centre, Private Bag 92169, Auckland, 1142, New Zealand.
Tianchi WangThe New Zealand Institute for Plant and Food Research Limited (PFR) Mt Albert, Auckland Mail Centre, Private Bag 92169, Auckland, 1142, New Zealand.
Ben A W WarrenThe New Zealand Institute for Plant and Food Research Limited (PFR) Mt Albert, Auckland Mail Centre, Private Bag 92169, Auckland, 1142, New Zealand.
Susan J ThomsonThe New Zealand Institute for Plant and Food Research Limited (PFR) Lincoln, Christchurch Mail Centre, Private Bag 4704, Christchurch, 8140, New Zealand.
Andrew C AllanThe New Zealand Institute for Plant and Food Research Limited (PFR) Mt Albert, Auckland Mail Centre, Private Bag 92169, Auckland, 1142, New Zealand.
Richard C MacknightDepartment of Biochemistry, The New Zealand Institute for Plant and Food Research Limited, University of Otago, PO Box 56, Dunedin, 9054, New Zealand.
Erika Varkonyi-GasicThe New Zealand Institute for Plant and Food Research Limited (PFR) Mt Albert, Auckland Mail Centre, Private Bag 92169, Auckland, 1142, New Zealand. erika.varkonyi-gasic@plantandfood.co.nz.ORCID http://orcid.org/0000-0002-1068-4085
Plant & Food Research · NZ

Funding

Ministry of Science and Innovation, New Zealand C10X0816New Zealand Institute for Plant and Food Research Limited Core funding
6 · The paper itself

Abstract

key messageGenome-wide targets of Actinidia chinensis SVP2 confirm roles in ABA- and dehydration-mediated growth repression and reveal a conservation in mechanism of action between SVP genes of taxonomically distant Arabidopsis and a woody perennial kiwifruit. The molecular mechanisms underlying growth and dormancy in woody perennials are largely unknown. In Arabidopsis, the MADS-box transcription factor SHORT VEGETATIVE PHASE (SVP) plays a key role in the progression from vegetative to floral development, and in woody perennials SVP-like genes are also proposed to be involved in controlling dormancy. During kiwifruit development SVP2 has a role in growth inhibition, with high-chill kiwifruit Actinidia deliciosa transgenic lines overexpressing SVP2 showing suppressed bud outgrowth. Transcriptomic analyses of these plants suggests that SVP2 mimics the well-documented abscisic acid (ABA) effect on the plant dehydration response. To corroborate the growth inhibition role of SVP2 in kiwifruit development at the molecular level, we analysed the genome-wide direct targets of SVP2 using chromatin immunoprecipitation followed by high-throughput sequencing in kiwifruit A. chinensis. SVP2 was found to bind to at least 297 target sites in the kiwifruit genome, and potentially modulates 252 genes that function in a range of biological processes, especially those involved in repressing meristem activity and ABA-mediated dehydration pathways. In addition, our ChIP-seq analysis reveals remarkable conservation in mechanism of action between SVP genes of taxonomically distant plant species.

Indexed as

Gene Expression Regulation, PlantActinidiaDroughtsFlowersFruitMADS Domain ProteinsPlant ProteinsPlants, Genetically ModifiedStress, PhysiologicalMADS Domain ProteinsPlant ProteinsABABud dormancyChIP-seqDehydrationKiwifruit (Actinidia spp.)SVP

Identifiers

PMID29222611
OpenAlexW2774932864

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.