ArticleScientific reports2017
Genome-wide and gene-based association mapping for rice eating and cooking characteristics and protein content.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.
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Who cites it
45 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Pooled it
- Superior haplotypes for transforming crop breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Genetic dissection of cold stress tolerance and yield potential under cold stress in nested synthetic wheat (Triticum aestivum L.) introgression libraries using multi-locus genome-wide association and haplotype analysis.Functional & integrative genomics · 2026Article
- Article
- Identification of new genomic loci for seed protein and oil content in the soybean pangenome using genome-wide association and haplotype analyses.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Genetic Diversity of Indigenous Rice Varieties Cultivated by Mon-Khmer-Speaking Ethnic Communities in Thailand.Rice (New York, N.Y.) · 2025Article
- Novel chromosome segment substitution lines derived fromBreeding science · 2025Article
- Unique starch biosynthesis pathways in wild rice revealed by multi-omics analyses.Plant biotechnology journal · 2025Article
- Comprehensive GWAS and Transcriptome Analysis Discovered Candidate Gene Associated with Starch Pasting Properties of Temperate japonica rice (Oryza sativa L.).Rice (New York, N.Y.) · 2025Article
- Effects of Planting Methods and Varieties on Rice Quality in Northern China.Foods (Basel, Switzerland) · 2025Article
- Review
- Deciphering of Genomic Loci Associated with Alkaline Tolerance in Soybean [Plants (Basel, Switzerland) · 2025Article
- Identification of superior and rare haplotypes to optimize branch number in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Population Structure and Genetic Diversity of Shanlan Landrace Rice for GWAS of Cooking and Eating Quality Traits.International journal of molecular sciences · 2024Article
- Superior haplotypes of key drought-responsive genes reveal opportunities for the development of climate-resilient rice varieties.Communications biology · 2024Article
- Superior haplotypes towards the development of blast and bacterial blight-resistant rice.Frontiers in plant science · 2024Article
- Integration of genome-wide association studies reveal loci associated with salt tolerance score of rice at the seedling stage.Journal of applied genetics · 2023Article
- QTL detection for rice grain storage protein content and genetic effect verifications.Molecular breeding : new strategies in plant improvement · 2023Article
- Identification of Candidate Genes that Affect the Contents of 17 Amino Acids in the Rice Grain Using a Genome-Wide Haplotype Association Study.Rice (New York, N.Y.) · 2023Article
- Genome-wide survey identified superior and rare haplotypes for plant height in the north-eastern soybean germplasm of China.Molecular breeding : new strategies in plant improvement · 2023Article
Corrections and comments
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Rice eating and cooking quality and protein content (PC) are important properties affecting consumers' preferences, nutrition and health. Linkage QTL mapping and association studies are usually applied to genetically dissect related traits, which could be further facilitated by high density SNP markers and gene annotation based on reference genome to rapid identify candidate genes associated with interested traits. Here, we carried out an association study for apparent amylose content (AC), gel consistency (GC), gelatinization temperature (GT) and PC evaluated in two environments using a diverse panel of 258 accessions from 3 K Rice Genome Project. Wide phenotypic variations were observed in this panel. Genome-wide association study using 22,488 high quality SNPs identified 19 QTL affecting the four traits. Combining gene-based association study and haplotype analyses plus functional annotation allowed us to shortlist nine candidate genes for four important QTL regions affecting AC, GC and GT, including two cloned genes (Wx and ALK), and seven novels. The research suggested that GWAS and gene-based association analysis followed by haplotype analysis is an effective way to detect candidate genes. The identified genes and QTL provided valuable sources for future functional characterization and genetic improvement of rice eating and cooking quality and PC.
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