Evidence map›Paper›PMID 29222488›Full record

ArticleNature communications2017

Different carotenoid conformations have distinct functions in light-harvesting regulation in plants.

Nicoletta Liguori, Pengqi Xu, Ivo H M van Stokkum, Bart van Oort, Yinghong Lu, Daniel Karcher, Ralph Bock, Roberta Croce

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed.

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  11. Ultrafast excited-state dynamics of Luteins in the major light-harvesting complex LHCII.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2024
    Article
  12. Article
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  16. The origin of pigment-binding differences in CP29 and LHCII: the role of protein structure and dynamics.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
  17. Article
  18. Article
  19. Review
  20. Functional plasticity ofAoB PLANTS · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Nicoletta LiguoriDepartment of Physics and Astronomy and Institute for Lasers, Life and Biophotonics, Faculty of Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands.
Pengqi XuDepartment of Physics and Astronomy and Institute for Lasers, Life and Biophotonics, Faculty of Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands.
Ivo H M van StokkumDepartment of Physics and Astronomy and Institute for Lasers, Life and Biophotonics, Faculty of Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-6143-2021
Bart van OortDepartment of Physics and Astronomy and Institute for Lasers, Life and Biophotonics, Faculty of Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-5470-1545
Yinghong LuMax-Planck-Institut für Molekulare Pflanzenphysiologie Wissenschaftspark Golm, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Daniel KarcherMax-Planck-Institut für Molekulare Pflanzenphysiologie Wissenschaftspark Golm, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Ralph BockMax-Planck-Institut für Molekulare Pflanzenphysiologie Wissenschaftspark Golm, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Roberta CroceDepartment of Physics and Astronomy and Institute for Lasers, Life and Biophotonics, Faculty of Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands. r.croce@vu.nl.ORCID http://orcid.org/0000-0003-3469-834X

Funding

European Research Council 281341
6 · The paper itself

Abstract

To avoid photodamage plants regulate the amount of excitation energy in the membrane at the level of the light-harvesting complexes (LHCs). It has been proposed that the energy absorbed in excess is dissipated via protein conformational changes of individual LHCs. However, the exact quenching mechanism remains unclear. Here we study the mechanism of quenching in LHCs that bind a single carotenoid species and are constitutively in a dissipative conformation. Via femtosecond spectroscopy we resolve a number of carotenoid dark states, demonstrating that the carotenoid is bound to the complex in different conformations. Some of those states act as excitation energy donors for the chlorophylls, whereas others act as quenchers. Via in silico analysis we show that structural changes of carotenoids are expected in the LHC protein domains exposed to the chloroplast lumen, where acidification triggers photoprotection in vivo. We propose that structural changes of LHCs control the conformation of the carotenoids, thus permitting access to different dark states responsible for either light harvesting or photoprotection.

Indexed as

CarotenoidsChlorophyllChloroplastsComputer SimulationEnergy TransferLightLight-Harvesting Protein ComplexesMolecular Dynamics SimulationNicotianaPhotosynthesisPlants, Genetically ModifiedProtein BindingProtein ConformationSpectrum AnalysisCarotenoidsChlorophyllLight-Harvesting Protein Complexes

Identifiers

PMID29222488
PMCPMC5722816

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.