Evidence map›Paper›PMID 29222465›Full record

ArticleNature communications2017

The dynamic dimer structure of the chaperone Trigger Factor.

Leonor Morgado, Björn M Burmann, Timothy Sharpe, Adam Mazur, Sebastian Hiller

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Structural features of chloroplast trigger factor determined at 2.6 Å resolution.Acta crystallographica. Section D, Structural biology · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Redefining Molecular Chaperones as Chaotropes.Frontiers in molecular biosciences · 2021
    Review
  15. Article
  16. Article
  17. Article
  18. Nature and Regulation of Protein Folding on the Ribosome.Trends in biochemical sciences · 2019
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Leonor MorgadoBiozentrum, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland.
Björn M BurmannBiozentrum, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland.ORCID http://orcid.org/0000-0002-3135-7964
Timothy SharpeBiozentrum, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland.
Adam MazurBiozentrum, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland.
Sebastian HillerBiozentrum, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland. sebastian.hiller@unibas.ch.ORCID http://orcid.org/0000-0002-6709-4684

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The chaperone Trigger Factor (TF) from Escherichia coli forms a dimer at cellular concentrations. While the monomer structure of TF is well known, the spatial arrangement of this dimeric chaperone storage form has remained unclear. Here, we determine its structure by a combination of high-resolution NMR spectroscopy and biophysical methods. TF forms a symmetric head-to-tail dimer, where the ribosome binding domain is in contact with the substrate binding domain, while the peptidyl-prolyl isomerase domain contributes only slightly to the dimer affinity. The dimer structure is highly dynamic, with the two ribosome binding domains populating a conformational ensemble in the center. These dynamics result from intermolecular in trans interactions of the TF client-binding site with the ribosome binding domain, which is conformationally frustrated in the absence of the ribosome. The avidity in the dimer structure explains how the dimeric state of TF can be monomerized also by weakly interacting clients.

Indexed as

Protein MultimerizationBinding SitesEscherichia coliEscherichia coli ProteinsMagnetic Resonance SpectroscopyMolecular ChaperonesMolecular Dynamics SimulationPeptidylprolyl IsomeraseProtein BindingProtein DomainsProtein FoldingRibosomesEscherichia coli ProteinsMolecular ChaperonesPeptidylprolyl Isomerasetrigger factor, E coli

Identifiers

PMID29222465
PMCPMC5722895

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.