Evidence map›Paper›PMID 29222414›Full record

ArticleScientific reports2017

Structural Dynamics of the MscL C-terminal Domain.

Navid Bavi, Adam D Martinac, D Marien Cortes, Omid Bavi, Pietro Ridone, Takeshi Nomura, Adam P Hill, Boris Martinac, Eduardo Perozo

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Photoactivation of a Mechanosensitive Channel.Frontiers in molecular biosciences · 2022
    Article
  9. Cyclodextrins increase membrane tension and are universal activators of mechanosensitive channels.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Navid BaviVictor Chang Cardiac Research Institute, 405 Liverpool Street, Darlinghurst, New South Wales, 2010, Australia.ORCID 0000-0001-7040-0710
Adam D MartinacVictor Chang Cardiac Research Institute, 405 Liverpool Street, Darlinghurst, New South Wales, 2010, Australia.
D Marien CortesTexas Tech University Health Sciences Center, Lubbock, Texas, 79430, USA.
Omid BaviVictor Chang Cardiac Research Institute, 405 Liverpool Street, Darlinghurst, New South Wales, 2010, Australia.
Pietro RidoneVictor Chang Cardiac Research Institute, 405 Liverpool Street, Darlinghurst, New South Wales, 2010, Australia.
Takeshi NomuraVictor Chang Cardiac Research Institute, 405 Liverpool Street, Darlinghurst, New South Wales, 2010, Australia.
Adam P HillVictor Chang Cardiac Research Institute, 405 Liverpool Street, Darlinghurst, New South Wales, 2010, Australia.
Boris MartinacVictor Chang Cardiac Research Institute, 405 Liverpool Street, Darlinghurst, New South Wales, 2010, Australia. b.martinac@victorchang.edu.au.ORCID 0000-0001-8422-7082
Eduardo PerozoDepartment of Biochemistry and Molecular Biology, University of Chicago, 929 E 57th St, Chicago, Illinois, 60637, USA. eperozo@uchicago.edu.

Funding

Structural Dynamics of Mechanosensitive ChannelsR01GM063617 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI PEROZO, EDUARDO A · 2001 to 2008
$2.1M
NIGMS NIH HHS R01 GM063617
6 · The paper itself

Abstract

The large conductance mechanosensitive channel (MscL), acts as an osmoprotective emergency valve in bacteria by opening a large, water-filled pore in response to changes in membrane tension. In its closed configuration, the last 36 residues at the C-terminus form a bundle of five α-helices co-linear with the five-fold axis of symmetry. Here, we examined the structural dynamics of the C-terminus of EcMscL using site-directed spin labelling electron paramagnetic resonance (SDSL EPR) spectroscopy. These experiments were complemented with computational modelling including molecular dynamics (MD) simulations and finite element (FE) modelling. Our results show that under physiological conditions, the C-terminus is indeed an α-helical bundle, located near the five-fold symmetry axis of the molecule. Both experiments and computational modelling demonstrate that only the top part of the C-terminal domain (from the residue A110 to E118) dissociates during the channel gating, while the rest of the C-terminus stays assembled. This result is consistent with the view that the C-terminus functions as a molecular sieve and stabilizer of the oligomeric MscL structure as previously suggested.

Indexed as

Amino Acid SequenceEscherichia coli ProteinsFinite Element AnalysisIon ChannelsMolecular Dynamics SimulationMutagenesisProtein DomainsProtein MultimerizationProtein Structure, QuaternaryEscherichia coli ProteinsIon ChannelsMscL protein, E coli

Identifiers

PMID29222414
PMCPMC5722894

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.