Evidence map›Paper›PMID 29220673›Full record

ArticleAmerican journal of human genetics2017

De Novo Variants in GRIA4 Lead to Intellectual Disability with or without Seizures and Gait Abnormalities.

Sonja Martin, Adam Chamberlin, Deepali N Shinde, Maja Hempel, Tim M Strom, Allison Schreiber, Jessika Johannsen, Lilian Bomme Ousager, Martin J Larsen, Lars Kjaersgaard Hansen and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 69 citations in OpenAlex.

  1. Pooled it
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  17. Movement Disorders inMovement disorders clinical practice · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 3 countries.

Sonja MartinInstitute of Human Genetics, University Medical Center Leipzig, 04103 Leipzig, Germany.
Adam ChamberlinDivision of Clinical Genomics, Ambry Genetics, Aliso Viejo, CA 92565, USA.
Deepali N ShindeDivision of Clinical Genomics, Ambry Genetics, Aliso Viejo, CA 92565, USA.
Maja HempelInstitute of Human Genetics, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany.
Tim M StromInstitute of Human Genetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany; Institute of Human Genetics, Technische Universität München, 81675 Munich, Germany.
Allison SchreiberGenomic Medicine Institute, Cleveland Clinic, Cleveland, OH 44195, USA.
Jessika JohannsenDepartment of Pediatrics, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany.
Lilian Bomme OusagerDepartment of Clinical Genetics, Odense University Hospital, 5000 Odense, Denmark.
Martin J LarsenDepartment of Clinical Genetics, Odense University Hospital, 5000 Odense, Denmark.
Lars Kjaersgaard HansenDepartment of Paediatrics, Odense University Hospital, 5000 Odense, Denmark.
Ali FatemiDivision of Neurogenetics and Hugo W. Moser Research Institute, Kennedy Krieger Institute, Baltimore, MD 21205, USA; Departments of Neurology and Pediatrics, Johns Hopkins Medical Institutions, Baltimore, MD 21205, USA.
Julie S CohenDivision of Neurogenetics and Hugo W. Moser Research Institute, Kennedy Krieger Institute, Baltimore, MD 21205, USA.
Johannes LemkeInstitute of Human Genetics, University Medical Center Leipzig, 04103 Leipzig, Germany.
Kristina P SørensenDepartment of Clinical Genetics, Odense University Hospital, 5000 Odense, Denmark.
Katherine L HelbigDivision of Clinical Genomics, Ambry Genetics, Aliso Viejo, CA 92565, USA.
Davor LesselInstitute of Human Genetics, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany.
Rami Abou JamraInstitute of Human Genetics, University Medical Center Leipzig, 04103 Leipzig, Germany. Electronic address: rami.aboujamra@medizin.uni-leipzig.de.
Odense University Hospital · DKAmbry Genetics (United States) · USUniversität Hamburg · DEKennedy Krieger Institute · USLeipzig University · DECleveland Clinic · USHelmholtz Zentrum München · DEUniversity Hospital Leipzig · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Using trio whole-exome sequencing, we have identified de novo heterozygous pathogenic variants in GRIA4 in five unrelated individuals with intellectual disability and other symptoms. GRIA4 encodes an AMPA receptor subunit known as GluR4, which is found on excitatory glutamatergic synapses and is important for learning and memory. Four of the variants are located in the highly conserved SYTANLAAF motif in the transmembrane protein M3, and the fifth is in an extra-cellular domain. Molecular modeling of the altered protein showed that three of the variants in the SYTANLAAF motif orient toward the center of the pore region and most likely lead to disturbance of the gating mechanism. The fourth variant in the SYTANLAAF motif most likely results in reduced permeability. The variant in the extracellular domain potentially interferes with the binding between the monomers. On the basis of clinical information and genetic results, and the fact that other subunits of the AMPA receptor have already been associated with neurodevelopmental disorders, we suggest that pathogenic de novo variants in GRIA4 lead to intellectual disability with or without seizures, gait abnormalities, problems of social behavior, and other variable features.

Indexed as

AdolescentAdultChild, PreschoolExome SequencingFemaleGait Disorders, NeurologicHumansIntellectual DisabilityMaleModels, MolecularMovement DisordersProblem BehaviorReceptors, AMPASeizuresSocial BehaviorYoung Adultglutamate receptor ionotropic, AMPA 4Receptors, AMPAAMPA receptorde novoexome sequencingGluR4GRIA4intellectual disabilityseizuresspeech delay

Identifiers

PMID29220673
PMCPMC5812909
OpenAlexW2772560438

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.