Evidence map›Paper›PMID 29220656›Full record

ArticleMolecular cell2017

MPK1/SLT2 Links Multiple Stress Responses with Gene Expression in Budding Yeast by Phosphorylating Tyr1 of the RNAP II CTD.

Nathan Yurko, Xiaochuan Liu, Takashi Yamazaki, Mainul Hoque, Bin Tian, James L Manley

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. RNA Pol II Assembly Affects ncRNA Expression.International journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Manganese Stress Tolerance Depends on Yap1 and Stress-Activated MAP Kinases.International journal of molecular sciences · 2022
    Article
  14. Substrates of the MAPK Slt2: Shaping Yeast Cell Integrity.Journal of fungi (Basel, Switzerland) · 2022
    Review
  15. Article
  16. Control of Gene Expression via the Yeast CWI Pathway.International journal of molecular sciences · 2022
    Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Nathan YurkoDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Xiaochuan LiuDepartment of Microbiology, Biochemistry, and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ, USA.
Takashi YamazakiDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Mainul HoqueDepartment of Microbiology, Biochemistry, and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ, USA.
Bin TianDepartment of Microbiology, Biochemistry, and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ, USA.
James L ManleyDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA. Electronic address: jlm2@columbia.edu.
Columbia University · USRutgers, The State University of New Jersey · USRutgers New Jersey Medical School

Funding

Regulation of RNA processing: Mechanisms and ConsequencesR35GM118136 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI James L. Manley · 2016 to 2026
$8.9M
Regulation of Alternative Cleavage and PolyadenylationR01GM084089 · NIGMS · WISTAR INSTITUTE · PI TIAN, BIN · 2008 to 2023
$6.7M
CELLULAR AND MOLECULAR FOUNDATIONS OF BIOMEDICAL SCIENCET32GM008798 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRYWES, RON M · 2001 to 2018
$6.3M
NIGMS NIH HHS R01 GM084089NIGMS NIH HHS R35 GM118136NIGMS NIH HHS T32 GM008798
6 · The paper itself

Abstract

The RNA polymerase II largest subunit C-terminal domain consists of repeated YSPTSPS heptapeptides. The role of tyrosine-1 (Tyr1) remains incompletely understood, as, for example, mutating all Tyr1 residues to Phe (Y1F) is lethal in vertebrates but a related mutant has only a mild phenotype in S. pombe. Here we show that Y1F substitution in budding yeast resulted in a strong slow-growth phenotype. The Y1F strain was also hypersensitive to several different cellular stresses that involve MAP kinase signaling. These phenotypes were all linked to transcriptional changes, and we also identified genetic and biochemical interactions between Tyr1 and both transcription initiation and termination factors. Further studies uncovered defects related to MAP kinase I (Slt2) pathways, and we provide evidence that Slt2 phosphorylates Tyr1 in vitro and in vivo. Our study has thus identified Slt2 as a Tyr1 kinase, and in doing so provided links between stress response activation and Tyr1 phosphorylation.

Indexed as

Gene Expression Regulation, FungalStress, PhysiologicalCyclin-Dependent Kinase 8GenotypeMediator ComplexMitogen-Activated Protein KinasesMutationPhenotypePhosphorylationProtein DomainsRNA-Binding ProteinsRNA, FungalRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionCyclin-Dependent Kinase 8Mediator ComplexMitogen-Activated Protein KinasesNRD1 protein, S cerevisiaeRNA-Binding ProteinsRNA, FungalRNA Polymerase IIRNA polymerase II largest subunitSaccharomyces cerevisiae ProteinsSLT2 protein, S cerevisiaeSSN2 protein, S cerevisiaeSSN3 protein, S cerevisiaeTyrosineMediatorNNS complexRNA polymerase IISlt2 kinasestress responsetranscription terminationtyrosine phosphorylation

Identifiers

PMID29220656
PMCPMC5736309
OpenAlexW2773318831

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.