Query expansion using MeSH terms for dataset retrieval: OHSU at the bioCADDIE 2016 dataset retrieval challenge.

Theodore B Wright, David Ball, William Hersh

Abstract read

In one paragraph

Article in Database : the journal of biological databases and curation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it

0cells of the map it votes in

3citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

Identification of the Best Semantic Expansion to Query PubMed Through Automatic Performance Assessment of Four Search Strategies on All Medical Subject Heading Descriptors: Comparative Study.JMIR medical informatics · 2020
Article
A content-based dataset recommendation system for researchers-a case study on Gene Expression Omnibus (GEO) repository.Database : the journal of biological databases and curation · 2020
Article
Baseline and extensions approach to information retrieval of complex medical data: Poznan's approach to the bioCADDIE 2016.Database : the journal of biological databases and curation · 2018
Article

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Theodore B WrightDepartment of Medical Informatics & Clinical Epidemiology, School of Medicine, Oregon Health & Science University, 5th Floor, Biomedical Information Communication Center (BICC) 3181 S.W. Sam Jackson Park Rd., Portland, OR 97239, USA.

David BallDepartment of Medical Informatics & Clinical Epidemiology, School of Medicine, Oregon Health & Science University, 5th Floor, Biomedical Information Communication Center (BICC) 3181 S.W. Sam Jackson Park Rd., Portland, OR 97239, USA.

William HershDepartment of Medical Informatics & Clinical Epidemiology, School of Medicine, Oregon Health & Science University, 5th Floor, Biomedical Information Communication Center (BICC) 3181 S.W. Sam Jackson Park Rd., Portland, OR 97239, USA.

Funding

BioCADDIE: Biomedical and healthCAre Data Discovery and Indexing Engine centerU24AI117966 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OHNO-MACHADO, LUCILA · 2014 to 2016

$10.9M

NIAID NIH HHS U24 AI117966

6 · The paper itself

Abstract

Database URL: https://biocaddie.org/benchmark-data.

Indexed as

Databases, BibliographicMedical Subject HeadingsSoftwareInformation Storage and Retrieval

Identifiers

PMID29220467

DOI10.1093/database/bax065

PMCPMC5737054

What OpenQuestion holds

Textmetadata

LicenceCC BY

Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.