Evidence map›Paper›PMID 29220462›Full record

ArticleDatabase : the journal of biological databases and curation2017

First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes.

Carlos-Francisco Méndez-Cruz, Socorro Gama-Castro, Citlalli Mejía-Almonte, Marco-Polo Castillo-Villalba, Luis-José Muñiz-Rascado, Julio Collado-Vides

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Large-Scale Functional Analysis of CRP-Mediated Feed-Forward Loops.International journal of molecular sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Carlos-Francisco Méndez-CruzComputational Genomics Program, Center for Genomic Sciences, National Autonomous University of Mexico, Av. Universidad, s/n, Colonia Chamilpa, Cuernavaca, Morelos 62100, Mexico.
Socorro Gama-CastroComputational Genomics Program, Center for Genomic Sciences, National Autonomous University of Mexico, Av. Universidad, s/n, Colonia Chamilpa, Cuernavaca, Morelos 62100, Mexico.
Citlalli Mejía-AlmonteComputational Genomics Program, Center for Genomic Sciences, National Autonomous University of Mexico, Av. Universidad, s/n, Colonia Chamilpa, Cuernavaca, Morelos 62100, Mexico.
Marco-Polo Castillo-VillalbaComputational Genomics Program, Center for Genomic Sciences, National Autonomous University of Mexico, Av. Universidad, s/n, Colonia Chamilpa, Cuernavaca, Morelos 62100, Mexico.
Luis-José Muñiz-RascadoComputational Genomics Program, Center for Genomic Sciences, National Autonomous University of Mexico, Av. Universidad, s/n, Colonia Chamilpa, Cuernavaca, Morelos 62100, Mexico.
Julio Collado-VidesComputational Genomics Program, Center for Genomic Sciences, National Autonomous University of Mexico, Av. Universidad, s/n, Colonia Chamilpa, Cuernavaca, Morelos 62100, Mexico.

Funding

HIGH THROUGHPUT LITERATURE CURATION OF GENETIC REGULATION IN BACTERIAL MODELSR01GM110597 · NIGMS · CENTER FOR GENOMIC SCIENCES · PI COLLADO-VIDES, JULIO · 2015 to 2018
$1.6M
NIGMS NIH HHS R01 GM110597
6 · The paper itself

Abstract

Database URL: RegulonDB, http://regulondb.ccg.unam.mx.

Indexed as

Databases, BibliographicEscherichia coli K12RegulonSerine EndopeptidasesSupport Vector MachineTranscription FactorsProtein DomainsEscherichia coli periplasmic proteinaseSerine EndopeptidasesTranscription Factors

Identifiers

PMID29220462
PMCPMC5737074

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.