ArticleDatabase : the journal of biological databases and curation2017
A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge.
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Article in Database : the journal of biological databases and curation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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22citing papers in PubMed
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Who cites it
22 citing papers in PubMed.
- BioRAGent: natural language biomedical querying with retrieval-augmented multiagent systems.Briefings in bioinformatics · 2025Article
- Assessing the use of supplementary materials to improve genomic variant discovery.Database : the journal of biological databases and curation · 2023Article
- CoQUAD: a COVID-19 question answering dataset system, facilitating research, benchmarking, and practice.BMC bioinformatics · 2022Article
- BiodivNERE: Gold standard corpora for named entity recognition and relation extraction in the biodiversity domain.Biodiversity data journal · 2022Article
- Dataset search in biodiversity research: Do metadata in data repositories reflect scholarly information needs?PloS one · 2021Article
- An informatics research platform to make public gene expression time-course datasets reusable for more scientific discoveries.Database : the journal of biological databases and curation · 2020Article
- TREC-COVID: rationale and structure of an information retrieval shared task for COVID-19.Journal of the American Medical Informatics Association : JAMIA · 2020Article
- A content-based dataset recommendation system for researchers-a case study on Gene Expression Omnibus (GEO) repository.Database : the journal of biological databases and curation · 2020Article
- A supervised term ranking model for diversity enhanced biomedical information retrieval.BMC bioinformatics · 2019Article
- Large expert-curated database for benchmarking document similarity detection in biomedical literature search.Database : the journal of biological databases and curation · 2019Article
- DataMed - an open source discovery index for finding biomedical datasets.Journal of the American Medical Informatics Association : JAMIA · 2018Article
- User needs analysis and usability assessment of DataMed - a biomedical data discovery index.Journal of the American Medical Informatics Association : JAMIA · 2018Article
- The CAMH Neuroinformatics Platform: A Hospital-Focused Brain-CODE Implementation.Frontiers in neuroinformatics · 2018Article
- Probabilistic and machine learning-based retrieval approaches for biomedical dataset retrieval.Database : the journal of biological databases and curation · 2018Article
- Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge.Database : the journal of biological databases and curation · 2018Article
- Baseline and extensions approach to information retrieval of complex medical data: Poznan's approach to the bioCADDIE 2016.Database : the journal of biological databases and curation · 2018Article
- Improving average ranking precision in user searches for biomedical research datasets.Database : the journal of biological databases and curation · 2017Article
- Query expansion using MeSH terms for dataset retrieval: OHSU at the bioCADDIE 2016 dataset retrieval challenge.Database : the journal of biological databases and curation · 2017Article
- Multi-field query expansion is effective for biomedical dataset retrieval.Database : the journal of biological databases and curation · 2017Article
- A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge.Database : the journal of biological databases and curation · 2017Article
Corrections and comments
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Authors and funding
10 authors.
Trevor CohenSchool of Biomedical Informatics. The University of Texas Health Science Center at Houston/7000 Fannin St. Suite 600, Houston, TX, 77030, USA.
Kirk RobertsSchool of Biomedical Informatics. The University of Texas Health Science Center at Houston/7000 Fannin St. Suite 600, Houston, TX, 77030, USA.
Anupama E GururajSchool of Biomedical Informatics. The University of Texas Health Science Center at Houston/7000 Fannin St. Suite 600, Houston, TX, 77030, USA.
Xiaoling ChenSchool of Biomedical Informatics. The University of Texas Health Science Center at Houston/7000 Fannin St. Suite 600, Houston, TX, 77030, USA.
Saeid PournejatiSchool of Biomedical Informatics. The University of Texas Health Science Center at Houston/7000 Fannin St. Suite 600, Houston, TX, 77030, USA.
George AlterPopulation Studies Center, University of Michigan, 426 Thompson St. Ann Arbor, MI, 48104, USA.
William R HershDepartment of Medical Informatics and Clinical Epidemiology, Oregon Health and Science University, 3181 S.W. Sam Jackson Park Rd, Portland, OR, 97239, USA.
Dina Demner-FushmanU.S. National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894 USA.
Lucila Ohno-MachadoDepartment of Biomedical Informatics, University of California San Diego, Altman Clinical and Translational Research Institute Building, 9452 Medical Center Drive, La Jolla, CA, 92093, USA.
Hua XuSchool of Biomedical Informatics. The University of Texas Health Science Center at Houston/7000 Fannin St. Suite 600, Houston, TX, 77030, USA.
Funding
BioCADDIE: Biomedical and healthCAre Data Discovery and Indexing Engine centerU24AI117966 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OHNO-MACHADO, LUCILA · 2014 to 2016
$10.9MSemantic indexing of biomedical publications and clinical textZIALM010005 · NLM · NATIONAL LIBRARY OF MEDICINE · PI DEMNER-FUSHMAN, DINA · 2016 to 2020
$4.0MNIAID NIH HHS U24 AI117966
Abstract
Database URL: https://biocaddie.org/benchmark-data.
Indexed as
Biomedical ResearchDatabases, FactualInformation Storage and Retrieval
Identifiers
What OpenQuestion holds
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LicenceCC BY
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.