Evidence map›Paper›PMID 29218636›Full record

ArticleJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry2018

Incorporation of second coordination sphere D-amino acids alters Cd(II) geometries in designed thiolate-rich proteins.

Leela Ruckthong, Aniruddha Deb, Lars Hemmingsen, James E Penner-Hahn, Vincent L Pecoraro

Abstract read
In one paragraph

Article in Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Review
  3. Catalysis and Electron Transfer inChemical reviews · 2022
    Review
  4. De novo metalloprotein design.Nature reviews. Chemistry · 2022
    Article
  5. Article
  6. Catalysis and Electron Transfer in De Novo Designed Helical Scaffolds.Angewandte Chemie (International ed. in English) · 2020
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Celebrating Helmut Sigel.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Leela RuckthongDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48109-1055, USA.
Aniruddha DebDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48109-1055, USA.
Lars HemmingsenDepartment of Chemistry, University of Copenhagen, Universitetsparken 5, 2100, Copenhagen Ø, Denmark.
James E Penner-HahnDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48109-1055, USA.
Vincent L PecoraroDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48109-1055, USA. vlpec@umich.edu.

Funding

Toxic Metal Complexation By de Novo Designed PeptidesR01ES012236 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PECORARO, VINCENT L · 2003 to 2018
$4.4M
STRUCTURAL INVESTIGATIONS OF METALLOPROTEIN METAL SITESR01GM038047 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PENNER-HAHN, JAMES E. · 1992 to 2008
$1.6M
NIEHS NIH HHS R01 ES012236NIGMS NIH HHS R01 GM038047
6 · The paper itself

Abstract

We use a de Novo protein design strategy to demonstrate that the second coordination sphere of a metal site plays a key role in controlling coordination geometries of Cd(II)-tris-thiolate complexes. Specifically, we show that alteration of chirality within the core hydrophobic packing region of a three-stranded coiled coil (3SCC) can control the coordination number of Cd(II) by limiting steric encumbrance to the metal center. Within a specific class of 3SCCs [Ac-G-(LKALEEK)

Indexed as

Amino AcidsAmino Acid SequenceBinding SitesCadmiumCoordination ComplexesLigandsOligopeptidesProtein BindingProtein Conformation, alpha-HelicalProtein EngineeringProtein Structure, TertiaryStereoisomerismWaterAmino AcidsCadmiumCoordination ComplexesLigandsOligopeptidesWaterHeavy metalMetallocenter assemblyMetal sensorProtein engineering

Identifiers

PMID29218636
PMCPMC5756694

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.