Evidence map›Paper›PMID 29218438›Full record

ArticleScience China. Life sciences2017

Two novel bocaparvovirus species identified in wild Himalayan marmots.

Yuanyun Ao, Xiaoyue Li, Lili Li, Xiaolu Xie, Dong Jin, Jiemei Yu, Shan Lu, Zhaojun Duan

Abstract read
In one paragraph

Article in Science China. Life sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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  11. The triphibious warfare against viruses.Science China. Life sciences · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yuanyun AoNational Institute for Viral Diseases Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 100052, China.
Xiaoyue LiLaboratory Department, the First People's Hospital of Anqing, Anqing, 246000, China.
Lili LiNational Institute for Viral Diseases Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 100052, China.
Xiaolu XiePeking Union Medical College Hospital, Beijing, 100730, China.
Dong JinNational Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, China.
Jiemei YuNational Institute for Viral Diseases Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 100052, China. yjm1982@126.com.
Shan LuNational Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, China. lushan@icdc.cn.
Zhaojun DuanNational Institute for Viral Diseases Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 100052, China. zhaojund@126.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bocaparvovirus (BOV) is a genetically diverse group of DNA viruses and a possible cause of respiratory, enteric, and neurological diseases in humans and animals. Here, two highly divergent BOVs (tentatively named as Himalayan marmot BOV, HMBOV1 and HMBOV2) were identified in the livers and feces of wild Himalayan marmots in China, by viral metagenomic analysis. Five of 300 liver samples from Himalayan marmots were positive for HMBOV1 and five of 99 fecal samples from these animals for HMBOV2. Their nearly complete genome sequences are 4,672 and 4,887 nucleotides long, respectively, with a standard genomic organization and containing protein-coding motifs typical for BOVs. Based on their NS1, NP1, and VP1, HMBOV1 and HMBOV2 are most closely related to porcine BOV SX/1-2 (approximately 77.0%/50.0%, 50.0%/53.0%, and 79.0%/54.0% amino acid identity, respectively). Phylogenetic analysis of these three proteins showed that HMBOV1 and HMBOV2 formed two distinctly independent branches in BOVs. According to these results, HMBOV1 and HMBOV2 are two different novel species in the Bocaparvovirus genus. Their identification expands our knowledge of the genetic diversity and evolution of BOVs. Further studies are needed to investigate their potential pathogenicity and their impact on Himalayan marmots and humans.

Indexed as

AnimalsBase SequenceBocavirusChinaFecesGenome, ViralGeographyLiverMarmotaMetagenomicsOpen Reading FramesParvoviridae InfectionsPhylogenyRodent DiseasesSequence Analysis, DNASequence Homology, Amino Acidbocaparvovirusemerging infectious diseasesHimalayan marmotnovel

Identifiers

PMID29218438
PMCPMC7089499

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.