Evidence map›Paper›PMID 29217575›Full record

ArticleScience (New York, N.Y.)2017

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex.

Tomasz J Nowakowski, Aparna Bhaduri, Alex A Pollen, Beatriz Alvarado, Mohammed A Mostajo-Radji, Elizabeth Di Lullo, Maximilian Haeussler, Carmen Sandoval-Espinosa, Siyuan John Liu, Dmitry Velmeshev and 8 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 583 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
583citing papers in PubMed, 2 pooled it
34.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

583 citing papers in PubMed, 2 syntheses or guidelines pooled it, 1,003 citations in OpenAlex.

  1. Pooled it
  2. Variable expression ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Pooled it
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523 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Tomasz J NowakowskiDepartment of Neurology, University of California, San Francisco (UCSF), San Francisco, CA, USA. tomasz.nowakowski@ucsf.edu arnold.kriegstein@ucsf.edu.ORCID 0000-0003-2345-4964
Aparna BhaduriDepartment of Neurology, University of California, San Francisco (UCSF), San Francisco, CA, USA. tomasz.nowakowski@ucsf.edu arnold.kriegstein@ucsf.edu.ORCID 0000-0003-4625-6899
Alex A PollenDepartment of Neurology, University of California, San Francisco (UCSF), San Francisco, CA, USA.ORCID 0000-0003-3263-8634
Beatriz AlvaradoDepartment of Neurology, University of California, San Francisco (UCSF), San Francisco, CA, USA.ORCID 0000-0002-5212-1694
Mohammed A Mostajo-RadjiDepartment of Neurology, University of California, San Francisco (UCSF), San Francisco, CA, USA.ORCID 0000-0002-1634-7514
Elizabeth Di LulloDepartment of Neurology, University of California, San Francisco (UCSF), San Francisco, CA, USA.ORCID 0000-0002-5498-6149
Maximilian HaeusslerGenomics Institute, University of California, Santa Cruz, CA, USA.ORCID 0000-0001-8721-8253
Carmen Sandoval-EspinosaDepartment of Neurology, University of California, San Francisco (UCSF), San Francisco, CA, USA.
Siyuan John LiuThe Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, UCSF, San Francisco, CA, USA.ORCID 0000-0003-1042-0191
Dmitry VelmeshevDepartment of Neurology, University of California, San Francisco (UCSF), San Francisco, CA, USA.ORCID 0000-0002-7440-8805
Johain Ryad OunadjelaThe Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, UCSF, San Francisco, CA, USA.ORCID 0000-0002-5941-9610
Joe ShugaNew Technologies, Fluidigm, South San Francisco, CA, USA.
Xiaohui WangNew Technologies, Fluidigm, South San Francisco, CA, USA.ORCID 0000-0002-6992-3730
Daniel A LimThe Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, UCSF, San Francisco, CA, USA.ORCID 0000-0001-7221-3425
Jay A WestNew Technologies, Fluidigm, South San Francisco, CA, USA.ORCID 0000-0002-0916-8497
Anne A LeyratNew Technologies, Fluidigm, South San Francisco, CA, USA.
W James KentGenomics Institute, University of California, Santa Cruz, CA, USA.
Arnold R KriegsteinDepartment of Neurology, University of California, San Francisco (UCSF), San Francisco, CA, USA.ORCID 0000-0001-5742-2990
University of California, San Francisco · USFluidigm (United States) · USUniversity of California, Santa Cruz · US

Funding

Development and Expansion of the Human Cerebral CortexR35NS097305 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRIEGSTEIN, ARNOLD · 2017 to 2024
$8.5M
A Cellular Resolution Census of the Developing Human BrainU01MH114825 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, ERIC J, KRIEGSTEIN, ARNOLD · 2017 to 2021
$6.7M
Mapping the Developing Human Neocortex by Massively Parallel Single Cell AnalysisU01MH105989 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRIEGSTEIN, ARNOLD · 2014 to 2016
$5.1M
Long noncoding RNA regulation of neural stem cellsR01NS091544 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, DANIEL A · 2016 to 2020
$1.7M
BLRD VA I01 BX000252NIMH NIH HHS U01 MH105989NIMH NIH HHS U01 MH114825NINDS NIH HHS R01 NS091544NINDS NIH HHS R35 NS097305
6 · The paper itself

Abstract

Systematic analyses of spatiotemporal gene expression trajectories during organogenesis have been challenging because diverse cell types at different stages of maturation and differentiation coexist in the emerging tissues. We identified discrete cell types as well as temporally and spatially restricted trajectories of radial glia maturation and neurogenesis in developing human telencephalon. These lineage-specific trajectories reveal the expression of neurogenic transcription factors in early radial glia and enriched activation of mammalian target of rapamycin signaling in outer radial glia. Across cortical areas, modest transcriptional differences among radial glia cascade into robust typological distinctions among maturing neurons. Together, our results support a mixed model of topographical, typological, and temporal hierarchies governing cell-type diversity in the developing human telencephalon, including distinct excitatory lineages emerging in rostral and caudal cerebral cortex.

Indexed as

Gene Expression Regulation, DevelopmentalCerebral CortexHumansNeurogenesisNeurogliaNeuronsTelencephalon

Identifiers

PMID29217575
PMCPMC5991609
OpenAlexW2772624269

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.