Evidence map›Paper›PMID 29217277›Full record

ArticleClinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases2018

Absence of hybridization with the wild-type and mutant rpoB probes in the Genotype MTBDRplus assay detects 'disputed' rifampicin mutations.

N N Abanda, J Y Djieugoué, V S Khadka, E W Pefura-Yone, W F Mbacham, G Vernet, V M Penlap, Y Deng, S I Eyangoh, D W Taylor and 1 more

Abstract read
In one paragraph

Article in Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. DisputedAntimicrobial agents and chemotherapy · 2021
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

N N AbandaDepartment of Tropical Medicine, Medical Microbiology and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Mānoa, HI, USA; Biotechnology Centre, University of Yaoundé 1, Yaoundé, Cameroon.
J Y DjieugouéCentre Pasteur du Cameroun, Yaoundé, Cameroon.
V S KhadkaBioinformatics Core, Department of Complementary & Integrative Medicine, John A. Burns School of Medicine, University of Hawaii at Mānoa, HI, USA.
E W Pefura-YonePneumology Service, Yaoundé Jamot Hospital, Yaoundé, Cameroon.
W F MbachamBiotechnology Centre, University of Yaoundé 1, Yaoundé, Cameroon.
G VernetCentre Pasteur du Cameroun, Yaoundé, Cameroon.
V M PenlapCentre Pasteur du Cameroun, Yaoundé, Cameroon.
Y DengBiotechnology Centre, University of Yaoundé 1, Yaoundé, Cameroon.
S I EyangohCentre Pasteur du Cameroun, Yaoundé, Cameroon.
D W TaylorDepartment of Tropical Medicine, Medical Microbiology and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Mānoa, HI, USA. Electronic address: dwtaylor@hawaii.edu.
R G F LekeBiotechnology Centre, University of Yaoundé 1, Yaoundé, Cameroon.
Centre Pasteur du Cameroun · CMUniversité de Yaoundé I · CMUniversity of Hawaiʻi at Mānoa · USYaoundé General Hospital · CM

Funding

UH Hilo COP A&RP20GM103466 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI HELEN C TURNER · 2012 to 2026
$60.3M
The Role of gp120 on Cardiovascular Disease in People Living with HIVU54MD007601 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI Jerris Robert Hedges · 2017 to 2026
$59.5M
RESEARCH DESIGN AND BIOSTATISTICS COREU54MD007584 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI HEDGES, JERRIS ROBERT, MOKUAU, NOREEN · 2012 to 2018
$21.1M
Small Grants ProgramP30GM114737 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI NERURKAR, VIVEK RAMCHANDRA · 2015 to 2022
$8.1M
Northern/Pacific Universities Global Health Research Training ConsortiumR25TW009345 · FIC · UNIVERSITY OF WASHINGTON · PI KOLARS, JOSEPH C., NERURKAR, VIVEK RAMCHANDRA · 2012 to 2016
$5.9M
Training of Cameroonian Scientists in Research on MalariaD43TW009074 · FIC · UNIVERSITY OF HAWAII AT MANOA · PI NERURKAR, VIVEK RAMCHANDRA · 2011 to 2015
$978k
FIC NIH HHS D43 TW009074FIC NIH HHS R25 TW009345NIGMS NIH HHS P20 GM103466NIGMS NIH HHS P30 GM114737NIMHD NIH HHS U54 MD007584NIMHD NIH HHS U54 MD007601
6 · The paper itself

Abstract

objectiveMycobacterium tuberculosis isolates that fail to hybridize to at least one rpoB wild-type or any mutation probe on the Genotype MTBDRplus strip are assumed to be rifampicin-resistant. However, the precise mutation(s) are unknown. We sought to identify the mutations in isolates with such hybridization patterns and determine if the mutations are associated with resistance to rifampicin.

methodsIn this study, 275 M. tuberculosis isolates were screened with the Genotype MTBDRplus assay to identify isolates with the hybridization pattern. These isolates were sequenced and their minimum inhibitory concentrations (MIC) determined using the Bactec MGIT 960 system.

resultsAmong the 275 isolates tested, 15 (6%) isolates with the hybridization pattern were identified. Sequencing showed that failure to hybridize to rpoB wild-type probes resulted from the presence of 'disputed' rifampicin mutations, which are mutations not always associated with a rifampicin-resistant phenotype. All, except 3/15, isolates had a rifampicin-resistant phenotype (MIC > 1 μg/mL). One of the three isolates with a rifampicin-susceptible phenotype had the same mutation at position 526 (His526Leu) as another isolate that had a rifampicin-resistant phenotype.

conclusionThe recommendation of the Genotype MTBDRplus assay to assume rifampicin resistance based solely on failure to hybridize to rpoB wild-type probe allows the identification of important RIF-resistant isolates. About 20% (3/15) of such isolates could be missed by relying only on the standard MGIT 960 DST assay for drug susceptibility testing.

Indexed as

Antitubercular AgentsBacterial ProteinsBase SequenceDiagnosis, DifferentialDiagnostic Tests, RoutineDNA, BacterialDNA-Directed RNA PolymerasesDrug Resistance, BacterialGenes, BacterialGenotypeHumansIsoniazidMicrobial Sensitivity TestsMicrobial ViabilityMutationMycobacterium tuberculosisAntitubercular AgentsBacterial ProteinsDNA, BacterialDNA-Directed RNA PolymerasesIsoniazidRifampinrpoB protein, Mycobacterium tuberculosisDisputed rifampicin-resistant mutationsGenotype MTBDRplus v2No wildtype probe hybridization

Identifiers

PMID29217277
PMCPMC5988914
OpenAlexW2771770471

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.