Evidence map›Paper›PMID 29217200›Full record

ArticleDevelopmental biology2018

Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis.

Scott A Rankin, Kyle W McCracken, David M Luedeke, Lu Han, James M Wells, John M Shannon, Aaron M Zorn

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
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  13. The conundrum of pharyngeal teeth origin: the role of germ layers, pouches, and gill slits.Biological reviews of the Cambridge Philosophical Society · 2022
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  16. Tbx5 driveseLife · 2021
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  17. A Stem Cell Approach to Cure Type 1 Diabetes.Cold Spring Harbor perspectives in biology · 2021
    Review
  18. Review
  19. Stem cells and lung regeneration.American journal of physiology. Cell physiology · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Scott A RankinCenter for Stem Cell&Organoid Medicine (CuSTOM), Perinatal Institute, Divisions of Developmental Biology the Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OH 45229, USA.
Kyle W McCrackenCenter for Stem Cell&Organoid Medicine (CuSTOM), Perinatal Institute, Divisions of Developmental Biology the Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OH 45229, USA.
David M LuedekeCenter for Stem Cell&Organoid Medicine (CuSTOM), Perinatal Institute, Divisions of Developmental Biology the Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OH 45229, USA.
Lu HanCenter for Stem Cell&Organoid Medicine (CuSTOM), Perinatal Institute, Divisions of Developmental Biology the Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OH 45229, USA.
James M WellsCenter for Stem Cell&Organoid Medicine (CuSTOM), Perinatal Institute, Divisions of Developmental Biology the Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OH 45229, USA.
John M ShannonPulmonary Biology, Cincinnati Children's Hospital, and the Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OH 45229, USA. Electronic address: jmshannon8@gmail.com.
Aaron M ZornCenter for Stem Cell&Organoid Medicine (CuSTOM), Perinatal Institute, Divisions of Developmental Biology the Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OH 45229, USA. Electronic address: Aaron.Zorn@cchmc.org.
University of Cincinnati · USCincinnati Children's Hospital Medical Center · USPerinatal Institute · GB

Funding

Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI Alexander Miethke · 2007 to 2026
$24.4M
Project-3: Modeling EA/TEF in human organoidsP01HD093363 · NICHD · CINCINNATI CHILDRENS HOSP MED CTR · PI Wendy K Chung, Paul scot Kingma · 2017 to 2026
$16.2M
Intestinal Stem Cell Consortium Coordinating CenterU01DK085532 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NILAND, JOYCE CAROL · 2009 to 2018
$6.5M
Organoids as a Model System for Studying Gastrointestinal DiseaseU19AI116491 · NIAID · UNIVERSITY OF CINCINNATI · PI MOORE, SEAN RYAN · 2015 to 2019
$4.6M
Investigation of Regional Identity in Human Intestinal Stem CellsU01DK103117 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI HELMRATH, MICHAEL A. · 2014 to 2023
$4.0M
Deciphering the gene regulatory network controlling vertebrate endodermal fatesR01HD073179 · NICHD · UNIVERSITY OF CALIFORNIA-IRVINE · PI CHO, KEN W.Y., MJOLSNESS, ERIC D · 2013 to 2017
$2.9M
Molecular Basis of Liver Development.R01DK070858 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI ZORN, AARON M · 2007 to 2017
$2.9M
Limited Competition for the Continuation of the Intestinal Stem Cell Consortium Coordinating CenterU24DK085532 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NILAND, JOYCE CAROL · 2019 to 2023
$2.3M
Human Endocrine Cell DevelopmentR01DK092456 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI WELLS, JAMES M · 2012 to 2016
$2.3M
Osr transcription factors regulate embryonic lung developmentR01HL114898 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI ZORN, AARON M · 2012 to 2016
$2.1M
LPCAT1 is essential for perinatal lung function and survivalR01HL098319 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI SHANNON, JOHN M · 2010 to 2013
$1.9M
NHLBI NIH HHS R01 HL098319NHLBI NIH HHS R01 HL114898NIAID NIH HHS U19 AI116491NICHD NIH HHS P01 HD093363NICHD NIH HHS R01 HD073179NIDDK NIH HHS P30 DK078392NIDDK NIH HHS R01 DK070858NIDDK NIH HHS R01 DK092456NIDDK NIH HHS U01 DK085532NIDDK NIH HHS U01 DK103117NIDDK NIH HHS U24 DK085532
6 · The paper itself

Abstract

A small number of signaling pathways are used repeatedly during organogenesis, and they can have drastically different effects on the same population of cells depending on the embryonic stage. How cellular competence changes over developmental time is not well understood. Here we used Xenopus, mouse, and human pluripotent stem cells to investigate how the temporal sequence of Wnt, BMP, and retinoic acid (RA) signals regulates endoderm developmental competence and organ induction, focusing on respiratory fate. While Nkx2-1+ lung fate is not induced until late somitogenesis stages, here we show that lung competence is restricted by the gastrula stage as a result of Wnt and BMP-dependent anterior-posterior (A-P) patterning. These early Wnt and BMP signals make posterior endoderm refractory to subsequent RA/Wnt/BMP-dependent lung induction. We further mapped how RA modulates the response to Wnt and BMP in a temporal specific manner. In the gastrula RA promotes posterior identity, however in early somite stages of development RA regulates respiratory versus pharyngeal potential in anterior endoderm and midgut versus hindgut potential in posterior endoderm. Together our data suggest a dynamic and conserved response of vertebrate endoderm during organogenesis, wherein early Wnt/BMP/RA impacts how cells respond to later Wnt/BMP/RA signals, illustrating how reiterative combinatorial signaling can regulate both developmental competence and subsequent fate specification.

Indexed as

AnimalsBone Morphogenetic ProteinsEndodermHuman Embryonic Stem CellsHumansMiceMouse Embryonic Stem CellsOrganogenesisSomitesSpecies SpecificityTretinoinWnt ProteinsXenopus laevisXenopus ProteinsBone Morphogenetic ProteinsTretinoinWnt ProteinsXenopus ProteinsBmpEndodermForegutHindguthPSCIntestineLungMidgutMouseNkx2-1PatterningPharynxRetinoic AcidWntXenopus

Identifiers

PMID29217200
PMCPMC5785443
OpenAlexW2772638274

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.