Evidence map›Paper›PMID 29214786›Full record

ArticleYonsei medical journal2018

ITPKC and SLC11A1 Gene Polymorphisms and Gene-Gene Interactions in Korean Patients with Kawasaki Disease.

Kyu Yeun Kim, Yoon Sun Bae, Woohyuk Ji, Dongjik Shin, Ho Seong Kim, Dong Soo Kim

Open access · goldAbstract read
In one paragraph

Article in Yonsei medical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 2 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 2 syntheses or guidelines pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. [Research advances in genetic polymorphisms in Kawasaki disease].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2023
    Article
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  11. The rs1625579 T>G polymorphism in theInfection and drug resistance · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Kyu Yeun KimDepartment of Pediatrics, Yonsei University College of Medicine, Severance Children's Hospital, Seoul, Korea.ORCID https://orcid.org/0000-0002-8035-4436
Yoon Sun BaeMedizen Humancare Inc., Seoul, Korea.
Woohyuk JiSchool of Medicine, Kyung Hee University, Seoul, Korea.
Dongjik ShinMedizen Humancare Inc., Seoul, Korea.
Ho Seong KimDepartment of Pediatrics, Yonsei University College of Medicine, Severance Children's Hospital, Seoul, Korea.
Dong Soo KimDepartment of Pediatrics, Yonsei University College of Medicine, Severance Children's Hospital, Seoul, Korea. dskim6634@yuhs.ac.ORCID https://orcid.org/0000-0002-3270-506X
Yonsei University · KRDNACARE (South Korea) · KRKyung Hee University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeKawasaki disease (KD) is an acute systemic vasculitis. Both the etiology of KD and the erythema of Bacille Calmette-Guérin (BCG) injection sites observed in the disease are poorly understood. We investigated the association between KD and single nucleotide polymorphisms (SNPs) in two candidate genes: inositol 1,4,5-triphosphate 3-kinase (ITPKC), a well-studied KD-associated gene, and solute carrier 11a1 (SLC11A1), which is associated with the hypersensitive reaction to the BCG strain in Koreans. MATERIALS AND

methodsAssociations between KD and SNPs in two genes were evaluated. Potential associations between BCG injection site erythema and SNPs in two genes were also evaluated. Gene-gene interactions between ITPKC and SLC11A1 in KD and BCG injection site erythema were also analyzed.

resultsThree tagging SNPs in ITPKC and five tagging SNPs in SLC11A1 were genotyped in 299 KD patients and 210 control children. SNP rs28493229 in ITPKC was associated with KD and coronary artery complications. SNP rs77624405 in SLC11A1 was associated with KD. Comparisons of KD patients with and without BCG injection site erythema revealed that SNP rs17235409 in SLC11A1 was associated with erythema; no erythema-associated SNPs in ITPKC were identified. Interactions between ITPKC rs28493229_GG and SLC11A1 rs17235409_GA and between ITPKC rs10420685_GG and SLC11A1 rs17235409_AA were strongly associated with BCG injection site erythema.

conclusionThis study identified several important polymorphisms in the ITPKC and SLC11A1 genes in Koreans. The genetic variants identified in this study affected KD and erythema of BCG injection sites independently and through gene-gene interactions. Also, the effects of the polymorphisms were age-dependent.

Indexed as

Epistasis, GeneticGenetic Predisposition to DiseaseAsian PeopleBCG VaccineCase-Control StudiesCation Transport ProteinsChildChild, PreschoolErythemaFemaleGenetic Association StudiesHumansInfantMaleMucocutaneous Lymph Node SyndromeMutation RateBCG VaccineCation Transport ProteinsInositol 1,4,5-trisphosphate 3-kinaseNatural Resistance-associated Macrophage Protein 1Phosphotransferases (Alcohol Group Acceptor)gene-gene interactionITPKC geneKawasaki diseaseKoreanpolymorphismSLC11A1 gene

Identifiers

PMID29214786
PMCPMC5725348
OpenAlexW2774500008

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.