Evidence map›Paper›PMID 29214045›Full record

ArticleNPJ biofilms and microbiomes2017

The rumen microbiome: an underexplored resource for novel antimicrobial discovery.

Linda B Oyama, Susan E Girdwood, Alan R Cookson, Narcis Fernandez-Fuentes, Florence Privé, Hannah E Vallin, Toby J Wilkinson, Peter N Golyshin, Olga V Golyshina, Ralf Mikut and 13 more

Open access · goldAbstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 75 citations in OpenAlex.

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  18. A multidrug-resistantMicrobial genomics · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 7 countries.

Linda B OyamaInstitute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, Wales, SY23 3DA UK.
Susan E GirdwoodInstitute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, Wales, SY23 3DA UK.
Alan R CooksonInstitute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, Wales, SY23 3DA UK.
Narcis Fernandez-FuentesInstitute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, Wales, SY23 3DA UK.ORCID 0000-0002-6421-1080
Florence PrivéInstitute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, Wales, SY23 3DA UK.
Hannah E VallinInstitute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, Wales, SY23 3DA UK.
Toby J WilkinsonInstitute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, Wales, SY23 3DA UK.
Peter N GolyshinBangor University, Bangor, Gwynedd, LL57 2DG UK.ORCID 0000-0002-5433-0350
Olga V GolyshinaBangor University, Bangor, Gwynedd, LL57 2DG UK.
Ralf MikutKarlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein, Leopoldshafen, Germany.ORCID 0000-0001-9100-5496
Kai HilpertInstitute of Infection and Immunity, St. George's University of London, Cranmer Terrace, London, SW17 0RE UK.
Jennifer RichardsSpecialist Antimicrobial Chemotherapy Unit, Public Health Wales, University Hospital of Wales, Heath Park, Cardiff, CF14 4XW UK.
Mandy WoottonSpecialist Antimicrobial Chemotherapy Unit, Public Health Wales, University Hospital of Wales, Heath Park, Cardiff, CF14 4XW UK.
Joan E EdwardsWageningen University & Research, 6708 WE, Wageningen, Netherlands.
Marc MarescaAix Marseille Université, CNRS, Central Marseille, iSm2, Marseille, France.
Josette PerrierAix Marseille Université, CNRS, Central Marseille, iSm2, Marseille, France.
Fionnuala T LundyCentre for Experimental Medicine, School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast, Belfast, Northern Ireland, BT9 7BL UK.
Yu LuoCentre for Experimental Medicine, School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast, Belfast, Northern Ireland, BT9 7BL UK.
Mei ZhouSchool of Pharmacy, Queens's University Belfast, Belfast, BT9 7BL, Northern Ireland, UK.
Matthias HessUC Davis, College of Agricultural and Environmental Sciences, California, 95616 USA.
Hilario C MantovaniDepartment of Microbiology, Universidade Federal de Viçosa, Viçosa, 36570-900 Brazil.
Christopher J CreeveyInstitute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, Wales, SY23 3DA UK.
Sharon A HuwsInstitute for Global Food Security, School of Biological Sciences, Medical Biology Centre, Queen's University Belfast, 97 Lisburn Road, Belfast, Northern Ireland, BT9 7BL UK.
Aberystwyth University · GBQueen's University Belfast · GBBangor University · GBCentre National de la Recherche Scientifique · FRUniversity Hospital of Wales · GBKarlsruhe Institute of Technology · DESt George's, University of London · GBUniversidade Federal de Viçosa · BRUniversity of California, Davis · USWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antimicrobial peptides (AMPs) are promising drug candidates to target multi-drug resistant bacteria. The rumen microbiome presents an underexplored resource for the discovery of novel microbial enzymes and metabolites, including AMPs. Using functional screening and computational approaches, we identified 181 potentially novel AMPs from a rumen bacterial metagenome. Here, we show that three of the selected AMPs (Lynronne-1, Lynronne-2 and Lynronne-3) were effective against numerous bacterial pathogens, including methicillin-resistant

Identifiers

PMID29214045
PMCPMC5711939
OpenAlexW2734956387

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.