Evidence map›Paper›PMID 29212754›Full record

ArticleJournal of the Royal Society, Interface2017

Graph-facilitated resonant mode counting in stochastic interaction networks.

Michael F Adamer, Thomas E Woolley, Heather A Harrington

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Michael F AdamerWolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX1 2JD, UK adamer@maths.ox.ac.uk.ORCID 0000-0002-8996-7167
Thomas E WoolleyCardiff School of Mathematics, Cardiff University, Senghennydd Road, Cardiff CF24 4AGs, UK.ORCID 0000-0001-6225-5365
Heather A HarringtonWolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX1 2JD, UK.ORCID 0000-0002-1705-7869

Funding

Biotechnology and Biological Sciences Research Council
6 · The paper itself

Abstract

Oscillations in dynamical systems are widely reported in multiple branches of applied mathematics. Critically, even a non-oscillatory deterministic system can produce cyclic trajectories when it is in a low copy number, stochastic regime. Common methods of finding parameter ranges for stochastically driven resonances, such as direct calculation, are cumbersome for any but the smallest networks. In this paper, we provide a systematic framework to efficiently determine the number of resonant modes and parameter ranges for stochastic oscillations relying on real root counting algorithms and graph theoretic methods. We argue that stochastic resonance is a network property by showing that resonant modes only depend on the squared Jacobian matrix

Indexed as

Models, TheoreticalStochastic ProcessesAlgorithmschemical reaction networksgraph theoretic methodsquasi-cyclesresonant modessturm chains

Identifiers

PMID29212754
PMCPMC5746565

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.