Evidence map›Paper›PMID 29212540›Full record

ArticleBMC biology2017

Dorsal spine evolution in threespine sticklebacks via a splicing change in MSX2A.

Timothy R Howes, Brian R Summers, David M Kingsley

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Timothy R HowesDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, USA.
Brian R SummersDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA.
David M KingsleyDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA. kingsley@stanford.edu.
Stanford University · US

Funding

Genomic Basis of Vertebrate DiversityP50HG002568 · NHGRI · STANFORD UNIVERSITY · PI KINGSLEY, DAVID M · 2002 to 2011
$29.2M
Howard Hughes Medical Institute ID0EFEAG10811National Human Genome Research Institute P50 HG002568National Science Foundation ID0E5HAG10812National Science Foundation ID0EPMAG10813
6 · The paper itself

Abstract

backgroundDorsal spine reduction in threespine sticklebacks (Gasterosteus aculeatus) is a classic example of recurrent skeletal evolution in nature. Sticklebacks in marine environments typically have long spines that form part of their skeletal armor. Many derived freshwater populations have evolved shorter spines. Changes in spine length are controlled in part by a quantitative trait locus (QTL) previously mapped to chromosome 4, but the causative gene and mutations underlying the repeated evolution of this interesting skeletal trait have not been identified.

resultsRefined mapping of the spine length QTL shows that it lies near the MSX2A transcription factor gene. MSX2A is expressed in developing spines. In F1 marine × freshwater fish, the marine allele is preferentially expressed. Differences in expression can be attributed to splicing regulation. Due to the use of an alternative 5

conclusionsMSX2A is a major gene underlying dorsal spine reduction in freshwater sticklebacks. The gene is linked to a separate gene controlling bony plate loss, helping explain the concerted effects of chromosome 4 on multiple armor-reduction traits. The nature of the molecular changes provides an interesting example of morphological evolution occurring not through a simple amino acid change, nor through a change only in gene expression levels, but through a change in the ratio of splice products encoding both normal and truncated proteins.

Indexed as

Biological EvolutionRNA SplicingAllelesAmino Acid SequenceAnimalsAnimals, Genetically ModifiedBase SequenceFish ProteinsFresh WaterPhenotypeQuantitative Trait LociSequence AlignmentSmegmamorphaSpineTranscription FactorsFish ProteinsTranscription FactorsAcanthopterygiiAlternative splicingEnhancersEvolutionary geneticsFin spinesGasterosteidaeMSX2msxaQuantitative trait lociStickleback

Identifiers

PMID29212540
PMCPMC5719529
OpenAlexW2772916111

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.