Evidence map›Paper›PMID 29212449›Full record

ArticleBMC genetics2017

Maternal variant in the upstream of FOXP3 gene on the X chromosome is associated with recurrent infertility in Japanese Black cattle.

Taichi Arishima, Shinji Sasaki, Tomohiro Isobe, Yoshihisa Ikebata, Shinichi Shimbara, Shogo Ikeda, Keisuke Kawashima, Yutaka Suzuki, Manabu Watanabe, Sumio Sugano and 2 more

Open access · diamondAbstract read
In one paragraph

Article in BMC genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. The High Frequency of a G-Allele Variant of theAnimals : an open access journal from MDPI · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Frequency of an X-Linked Maternal Variant of the BovineAnimals : an open access journal from MDPI · 2022
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Taichi ArishimaKagoshima prefectural Cattle Breeding Development Institute, Osumi, So, Kagoshima, 899-8212, Japan.
Shinji SasakiNational Livestock Breeding Center, Odakura, Nishigo, Fukushima, 961-8511, Japan. s0sasaki@nlbc.go.jp.ORCID http://orcid.org/0000-0002-1070-2247
Tomohiro IsobeKagoshima prefectural Cattle Breeding Development Institute, Osumi, So, Kagoshima, 899-8212, Japan.
Yoshihisa IkebataKagoshima prefectural Cattle Breeding Development Institute, Osumi, So, Kagoshima, 899-8212, Japan.
Shinichi ShimbaraKagoshima prefectural Cattle Breeding Development Institute, Osumi, So, Kagoshima, 899-8212, Japan.
Shogo IkedaKagoshima prefectural Cattle Breeding Development Institute, Osumi, So, Kagoshima, 899-8212, Japan.
Keisuke KawashimaKagoshima prefectural Cattle Breeding Development Institute, Osumi, So, Kagoshima, 899-8212, Japan.
Yutaka SuzukiDepartment of Medical Genome Sciences, and Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, 277-8562, Japan.
Manabu WatanabeDepartment of Medical Genome Sciences, and Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, 277-8562, Japan.
Sumio SuganoDepartment of Medical Genome Sciences, and Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, 277-8562, Japan.
Kazunori MizoshitaKagoshima prefectural Cattle Breeding Development Institute, Osumi, So, Kagoshima, 899-8212, Japan.
Yoshikazu SugimotoShirakawa Institute of Animal Genetics, Japan Livestock Technology Association, Odakura, Nishigo, Fukushima, 961-8061, Japan.
Kagoshima Prefectural College · JPThe University of Tokyo · JPInstitute of Livestock and Grassland Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRepeat breeding, which is defined as cattle failure to conceive after three or more inseminations in the absence of clinical abnormalities, is a substantial problem in cattle breeding. To identify maternal genetic variants of repeat breeding in Japanese Black cattle, we selected 29 repeat-breeding heifers that failed to conceive following embryo transfer (ET) and conducted a genome-wide association study (GWAS) using the traits.

resultsWe found that a single-nucleotide polymorphism (SNP; g.92,377,635A > G) in the upstream region of the FOXP3 gene on the X chromosome was highly associated with repeat breeding and failure to conceive following ET (P = 1.51 × 10

conclusionsThis GWAS identified a maternal variant in the upstream region of FOXP3 that was associated with infertility in repeat-breeding Japanese Black cattle that failed to conceive using ET. The variant affected the level of FOXP3 mRNA expression. Thus, the results suggest that the risk-allele could serve as a useful marker to reduce and eliminate animals with inferior fertility in Japanese Black cattle.

Indexed as

X ChromosomeAnimalsCattleCattle DiseasesEmbryo TransferFemaleForkhead Transcription FactorsGene ExpressionGenome-Wide Association StudyInfertility, FemaleForkhead Transcription FactorsBeef cattleEmbryo transfer (ET)FOXP3Genome-wide association study (GWAS)InfertilityRepeat breeding

Identifiers

PMID29212449
PMCPMC5719641
OpenAlexW2772542644

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.