Evidence map›Paper›PMID 29212317›Full record

ArticleJournal of proteome research2018

Targeted Measurements of O- and N-Glycopeptides Show That Proteins in High Density Lipoprotein Particles Are Enriched with Specific Glycosylation Compared to Plasma.

Muchena J Kailemia, Wanghui Wei, Khoa Nguyen, Elizabeth Beals, Lisa Sawrey-Kubicek, Christopher Rhodes, Chenghao Zhu, Romina Sacchi, Angela M Zivkovic, Carlito B Lebrilla

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Glycosylation and Cardiovascular Diseases.Advances in experimental medicine and biology · 2021
    Article
  11. Article
  12. Post-Translational Modifications of Circulating Alpha-1-Antitrypsin Protein.International journal of molecular sciences · 2020
    Review
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Muchena J KailemiaDepartment of Chemistry, ‡Department of Nutrition, and §Foods for Health Institute, University of California , Davis, California 95616, United States.ORCID 0000-0001-9359-1038
Wanghui WeiDepartment of Chemistry, ‡Department of Nutrition, and §Foods for Health Institute, University of California , Davis, California 95616, United States.
Khoa NguyenDepartment of Chemistry, ‡Department of Nutrition, and §Foods for Health Institute, University of California , Davis, California 95616, United States.
Elizabeth BealsDepartment of Chemistry, ‡Department of Nutrition, and §Foods for Health Institute, University of California , Davis, California 95616, United States.
Lisa Sawrey-KubicekDepartment of Chemistry, ‡Department of Nutrition, and §Foods for Health Institute, University of California , Davis, California 95616, United States.
Christopher RhodesDepartment of Chemistry, ‡Department of Nutrition, and §Foods for Health Institute, University of California , Davis, California 95616, United States.
Chenghao ZhuDepartment of Chemistry, ‡Department of Nutrition, and §Foods for Health Institute, University of California , Davis, California 95616, United States.
Romina SacchiDepartment of Chemistry, ‡Department of Nutrition, and §Foods for Health Institute, University of California , Davis, California 95616, United States.
Angela M ZivkovicDepartment of Chemistry, ‡Department of Nutrition, and §Foods for Health Institute, University of California , Davis, California 95616, United States.
Carlito B LebrillaDepartment of Chemistry, ‡Department of Nutrition, and §Foods for Health Institute, University of California , Davis, California 95616, United States.
University of California, Davis · US

Funding

The incorporation of human milk oligosaccharides in brain glycoconjugatesR01GM049077 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LEBRILLA, CARLITO B · 1999 to 2024
$6.3M
Comprehensive Characterization of Glycosylation Alterations in Alzheimer’s DiseaseR01AG062240 · NIA · UNIVERSITY OF CALIFORNIA AT DAVIS · PI JIN, LEE-WAY, LEBRILLA, CARLITO B · 2018 to 2022
$3.3M
NIA NIH HHS R01 AG062240NIGMS NIH HHS R01 GM049077
6 · The paper itself

Abstract

High density lipoprotein (HDL) particles are believed to be protective due to their inverse correlation with the prevalence of cardiovascular diseases. However, recent studies show that in some conditions such as heart disease and diabetes, HDL particles can become dysfunctional. Great attention has been directed toward HDL particle composition because the relative abundances of HDL constituents determine HDL's functional properties. A key factor to consider when studying the structure and composition of plasma particles is the protein glycosylation. Here, we profile the O- and N-linked glycosylation of HDL associated-proteins including the truncated form of Apo CIII and their glycan heterogeneity in a site-specific manner. Apolipoprotein CIII, fetuin A, and alpha 1 antitrypsin are glycoproteins associated with lipoproteins and are implicated in many cardiovascular and other disease conditions. A targeted method (UHPLC-QQQ) was used to measure the glycoprotein concentrations and site-specific glycovariations of the proteins in human plasma and compared with HDL particles isolated from the same plasma samples. The proteins found in the plasma are differentially glycosylated compared to those isolated in HDL. The results of this study suggest that glycosylation may play a role in protein partitioning in the blood, with possible functional implications.

Indexed as

Protein Processing, Post-Translationalalpha 1-Antitrypsinalpha-2-HS-GlycoproteinAmino Acid SequenceApolipoprotein C-IIICarbohydrate SequenceChromatography, High Pressure LiquidCluster AnalysisGlycopeptidesGlycosylationHumansLipoproteins, HDLTandem Mass Spectrometryalpha 1-Antitrypsinalpha-2-HS-GlycoproteinApolipoprotein C-IIIGlycopeptidesLipoproteins, HDLApo CIIIfetuin AglycopeptidesglycosylationHDLhigh density lipoproteinMRMtandem mass spectrometryUPLC

Identifiers

PMID29212317
PMCPMC6343480
OpenAlexW2771471503

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.