Evidence map›Paper›PMID 29209312›Full record

ArticleFrontiers in immunology2017

Dual Molecular Mechanisms Govern Escape at Immunodominant HLA A2-Restricted HIV Epitope.

David K Cole, Anna Fuller, Garry Dolton, Efthalia Zervoudi, Mateusz Legut, Kim Miles, Lori Blanchfield, Florian Madura, Christopher J Holland, Anna M Bulek and 7 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. T-cell virtuosity in ''knowing thyself".Frontiers in immunology · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Functional Profile of CD8Frontiers in immunology · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. TCR Recognition of Peptide-MHC-I: Rule Makers and Breakers.International journal of molecular sciences · 2020
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 3 countries.

David K ColeCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
Anna FullerCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
Garry DoltonCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
Efthalia ZervoudiCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
Mateusz LegutCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
Kim MilesCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
Lori BlanchfieldDepartment of Microbiology and Immunology, Emory University, Atlanta, GA, United States.
Florian MaduraCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
Christopher J HollandCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
Anna M BulekCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
John S BridgemanCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
John J MilesCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
Andrea J A SchauenburgCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
Konrad BeckCardiff University School of Dentistry, University Hospital, Heath Park, Cardiff, United Kingdom.
Brian D EvavoldDepartment of Microbiology and Immunology, Emory University, Atlanta, GA, United States.
Pierre J RizkallahCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
Andrew K SewellCardiff University School of Medicine, University Hospital, Heath Park, Cardiff, United Kingdom.
University Hospital of Wales · GBCardiff University · GBEmory University · US

Funding

Physical Basis for T Cell Receptor Binding and ActivityR01GM067079 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BAKER, BRIAN M · 2003 to 2015
$3.5M
Evolution of CD8+ TCR affinity during chronic viral infectionR01AI096879 · NIAID · EMORY UNIVERSITY · PI EVAVOLD, BRIAN D · 2012 to 2016
$2.1M
Biotechnology and Biological Sciences Research Council BB/H001085/1NIAID NIH HHS R01 AI096879NIGMS NIH HHS R01 GM067079Wellcome Trust
6 · The paper itself

Abstract

Serial accumulation of mutations to fixation in the SLYNTVATL (SL9) immunodominant, HIV p17 Gag-derived, HLA A2-restricted cytotoxic T lymphocyte epitope produce the SLFNTIAVL triple mutant "ultimate" escape variant. These mutations in solvent-exposed residues are believed to interfere with TCR recognition, although confirmation has awaited structural verification. Here, we solved a TCR co-complex structure with SL9 and the triple escape mutant to determine the mechanism of immune escape in this eminent system. We show that, in contrast to prevailing hypotheses, the main TCR contact residue is 4N and the dominant mechanism of escape is not

Indexed as

HIVimmune escapeMHCT-cellT-cell receptor

Identifiers

PMID29209312
PMCPMC5701626
OpenAlexW2767569203

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.