Evidence map›Paper›PMID 29208950›Full record

ArticleScientific reports2017

X-ray diffraction reveals the intrinsic difference in the physical properties of membrane and soluble proteins.

Xavier Robert, Josiane Kassis-Sahyoun, Nicoletta Ceres, Juliette Martin, Michael R Sawaya, Randy J Read, Patrice Gouet, Pierre Falson, Vincent Chaptal

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  3. Review
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  7. Data in brief · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Xavier RobertMolecular Microbiology and Structural Biochemistry institute, UMR5086 CNRS Univ-Lyon, F-69367, Cedex 7, Lyon, France.
Josiane Kassis-SahyounMolecular Microbiology and Structural Biochemistry institute, UMR5086 CNRS Univ-Lyon, F-69367, Cedex 7, Lyon, France.
Nicoletta CeresMolecular Microbiology and Structural Biochemistry institute, UMR5086 CNRS Univ-Lyon, F-69367, Cedex 7, Lyon, France.
Juliette MartinMolecular Microbiology and Structural Biochemistry institute, UMR5086 CNRS Univ-Lyon, F-69367, Cedex 7, Lyon, France.ORCID 0000-0002-4787-0885
Michael R SawayaMolecular Biology Institute, Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA.
Randy J ReadDepartment of Haematology, Cambridge Institute for Medical Research, University of Cambridge, Wellcome Trust/MRC Building, Hills Road, Cambridge, CB2 0XY, England.ORCID 0000-0001-8273-0047
Patrice GouetMolecular Microbiology and Structural Biochemistry institute, UMR5086 CNRS Univ-Lyon, F-69367, Cedex 7, Lyon, France.
Pierre FalsonMolecular Microbiology and Structural Biochemistry institute, UMR5086 CNRS Univ-Lyon, F-69367, Cedex 7, Lyon, France.
Vincent ChaptalMolecular Microbiology and Structural Biochemistry institute, UMR5086 CNRS Univ-Lyon, F-69367, Cedex 7, Lyon, France. vincent.chaptal@ibcp.fr.ORCID 0000-0003-2603-0294
Université Claude Bernard Lyon 1 · FRHoward Hughes Medical Institute · USUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Membrane proteins are distinguished from soluble proteins by their insertion into biological membranes. This insertion is achieved via a noticeable arrangement of hydrophobic amino acids that are exposed at the surface of the protein, and renders the interaction with the aliphatic tails of lipids more energetically favorable. This important difference between these two categories of proteins is the source of the need for a specific handling of membrane proteins, which transpired in the creation of new tools for their recombinant expression, purification and even crystallization. Following this line, we show here that crystals of membrane proteins display systematically higher diffraction anisotropy than those of soluble proteins. This phenomenon dramatically hampers structure solution and refinement, and has a strong impact on the quality of electron-density maps. A farther search for origins of this phenomenon showed that the type of crystallization, and thus the crystal packing, has no impact on anisotropy, nor does the nature or function of the membrane protein. Membrane proteins fully embedded within the membrane display equal anisotropy compared to the ones with extra membranous domains or fusions with soluble proteins. Overall, these results overturn common beliefs and call for a specific handling of their diffraction data.

Indexed as

X-Ray DiffractionAnisotropyCell MembraneCrystallizationDetergentsHumansMembrane ProteinsProtein ConformationDetergentsMembrane Proteins

Identifiers

PMID29208950
PMCPMC5717104
OpenAlexW2769681183

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.