Evidence map›Paper›PMID 29208711›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Molecular basis for the recognition of the human AAUAAA polyadenylation signal.

Yadong Sun, Yixiao Zhang, Keith Hamilton, James L Manley, Yongsheng Shi, Thomas Walz, Liang Tong

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Analysis ofMicroorganisms · 2026
    Article
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  11. Characterization and molecular targeting of CFIm25 (NUDT21/CPSF5) mRNA using miRNAs.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  12. Covalent targeting of splicing in T cells.Cell chemical biology · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yadong SunDepartment of Biological Sciences, Columbia University, New York, NY 10027.
Yixiao ZhangLaboratory of Molecular Electron Microscopy, Rockefeller University, New York, NY 10065.
Keith HamiltonDepartment of Biological Sciences, Columbia University, New York, NY 10027.
James L ManleyDepartment of Biological Sciences, Columbia University, New York, NY 10027; jlm2@columbia.edu twalz@mail.rockefeller.edu ltong@columbia.edu.
Yongsheng ShiDepartment of Microbiology and Molecular Genetics, School of Medicine, University of California, Irvine, CA 92697.
Thomas WalzLaboratory of Molecular Electron Microscopy, Rockefeller University, New York, NY 10065; jlm2@columbia.edu twalz@mail.rockefeller.edu ltong@columbia.edu.
Liang TongDepartment of Biological Sciences, Columbia University, New York, NY 10027; jlm2@columbia.edu twalz@mail.rockefeller.edu ltong@columbia.edu.ORCID 0000-0002-0563-6468

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Regulation of RNA processing: Mechanisms and ConsequencesR35GM118136 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI James L. Manley · 2016 to 2026
$8.9M
Structural and functional studies of mRNA processing, stability and quality controlR35GM118093 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI LIANG TONG · 2016 to 2026
$8.5M
Characterization of the mammalian mRNA-3'-end processing complexR01GM090056 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI SHI, YONGSHENG · 2010 to 2022
$4.2M
Acquisition of Detector for JEOL 3200 FSC Electron MicroscopeS10OD019994 · OD · NEW YORK STRUCTURAL BIOLOGY CENTER · PI CARRAGHER, BRIDGET OLIVIA · 2015 to 2015
$600k
NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM090056NIGMS NIH HHS R35 GM118093NIGMS NIH HHS R35 GM118136NIH HHS S10 OD019994
6 · The paper itself

Abstract

Nearly all eukaryotic messenger RNA precursors must undergo cleavage and polyadenylation at their 3'-end for maturation. A crucial step in this process is the recognition of the AAUAAA polyadenylation signal (PAS), and the molecular mechanism of this recognition has been a long-standing problem. Here, we report the cryo-electron microscopy structure of a quaternary complex of human CPSF-160, WDR33, CPSF-30, and an AAUAAA RNA at 3.4-Å resolution. Strikingly, the AAUAAA PAS assumes an unusual conformation that allows this short motif to be bound directly by both CPSF-30 and WDR33. The A1 and A2 bases are recognized specifically by zinc finger 2 (ZF2) of CPSF-30 and the A4 and A5 bases by ZF3. Interestingly, the U3 and A6 bases form an intramolecular Hoogsteen base pair and directly contact WDR33. CPSF-160 functions as an essential scaffold and preorganizes CPSF-30 and WDR33 for high-affinity binding to AAUAAA. Our findings provide an elegant molecular explanation for how PAS sequences are recognized for mRNA 3'-end formation.

Indexed as

PolyadenylationCleavage And Polyadenylation Specificity FactorCryoelectron MicroscopyHumansModels, MolecularNuclear ProteinsPoly AProtein ConformationRNA, MessengerRNA PrecursorsCleavage And Polyadenylation Specificity FactorNuclear ProteinsPoly ARNA, MessengerRNA PrecursorsWDR33 protein, humanpolyadenylationpre-mRNA 3′-end processingRNA recognitionWD40 domainszinc finger

Identifiers

PMID29208711
PMCPMC5816196

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.